FMO12812.5prime Sequence
1133 bp (943 high quality bases) assembled on 2013-01-29
> FMO12812.5prime
CAGTCGACATGCGCTATCAATGCACCAATGATGCCGGCTATGATACGGAA
CACACGTCCCTGAACTCGGACTTCGATGAGGCCGAGCTGCGACGGGAGCT
ACTAAGAGATAAATGGAAACTGCTCTTTGACATGTTCGATCCCGAGGGTT
TTGGCGAAATATCAGTCGAGGAATTCCTGGAGGCCCTCAAGTCGCCGGAG
TTCCTGTCCCAAGTGCCTATGAACAAGCGGGAGCTGCTGCTGGAGCGGGC
AAAGAAGGCGAAGCTGCCCACAGGACCCGGCTACGTGACGTTCCAGGACT
TTGTGAATGTGATGAGCGGCAAGCGGACACGTAGCTTTAAGTGCGCCGTA
CACCATCGAGATCGTGAAGTCTGCTCCGAAAACGATTTCCAGCTGGTGCT
AAACGAACCGCCACTCTTTCGCAAAATGGTGCACGCCGTGGCCTTGGAGA
TCCTGCCCGAGGAGCGGGATCGCAAGTACTACGCCGATCGCTACACCTGC
TGTCCGCCGCCTTTTTTCATCATCCTGGTTACTCTGGTGGAGCTGGGTTT
CTTTGTTTACCACTCAGTGGTCACGGGTGAGGCGGCGCCAAGGGGACCCA
TACCCTCGGACTCCATGTTCATCTACCGTCCCGATAAGCGTCACGAGATC
TGGCGCTTCCTCTTCTACATGGTACTCCATGCCGGGTGGCTGCATCTCGG
TTTTAACGTGGCAGTTCAGCTGGTTTTTGGGCTGCCACTGGAGATGGTTC
ATGGTTCCACGAGGATAGCCTGCATCTACTTCTCCGGGGTGCTGGCGGGA
AGCCTGGGCACTAGCATCTTTGACCCGGATGTGTTCCTTGTGGGCGCCAG
TGGTGGAGTTATACGCTTTGCTAAGCCGCCCACCTTGACAATGTGCTTCT
TCAACTATCCCCCAGATGCGTTATTGGAGTCATCAAGGCTGCTTCACATT
TCTGGTCTTCGTTTCCTTCGACTTTGGGCTTTGCCATCTTATGCCTCGCC
TTTGCTGGCGACGAACTGCAGCCTGGGAATCTATCGAAGTGATTTCCTTG
CCATTAGAATCAGGCGAAAACGGCGGGTGGCTGTTTCGTATGTGGCCCAA
TTTGGCTGGGGCATTGCTGCCTAACCTAATCCG
FMO12812.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stet-RB | 2380 | CG33166-RB | 350..1449 | 9..1125 | 4935 | 97.3 | Plus |
stet-RA | 1898 | CG33166-RA | 171..967 | 312..1125 | 3420 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1476582..1476995 | 961..541 | 1710 | 97.6 | Minus |
3L | 28110227 | 3L | 1477050..1477288 | 549..311 | 1150 | 98.7 | Minus |
3L | 28110227 | 3L | 1487754..1487936 | 316..134 | 900 | 99.5 | Minus |
3L | 28110227 | 3L | 1488098..1488190 | 110..18 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:44:26 has no hits.
FMO12812.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:31 Download gff for
FMO12812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RB | 343..1454 | 1..1133 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:10 Download gff for
FMO12812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RB | 343..1454 | 1..1133 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:59 Download gff for
FMO12812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RB | 343..1454 | 1..1133 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:59 Download gff for
FMO12812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1488098..1488195 | 12..110 | 97 | | Minus |
3L | 1476582..1476993 | 543..961 | 97 | <- | Minus |
3L | 1477057..1477287 | 312..542 | 99 | <- | Minus |
3L | 1487759..1487935 | 135..311 | 100 | <- | Minus |
3L | 1488006..1488029 | 111..134 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:10 Download gff for
FMO12812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1488098..1488195 | 12..110 | 97 | | Minus |
arm_3L | 1487759..1487935 | 135..311 | 100 | <- | Minus |
arm_3L | 1488006..1488029 | 111..134 | 100 | <- | Minus |
arm_3L | 1476582..1476993 | 543..961 | 97 | <- | Minus |
arm_3L | 1477057..1477287 | 312..542 | 99 | <- | Minus |