Clone FMO12812 Report

Search the DGRC for FMO12812

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:128
Well:12
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12812.5prime Sequence

1133 bp (943 high quality bases) assembled on 2013-01-29

> FMO12812.5prime
CAGTCGACATGCGCTATCAATGCACCAATGATGCCGGCTATGATACGGAA
CACACGTCCCTGAACTCGGACTTCGATGAGGCCGAGCTGCGACGGGAGCT
ACTAAGAGATAAATGGAAACTGCTCTTTGACATGTTCGATCCCGAGGGTT
TTGGCGAAATATCAGTCGAGGAATTCCTGGAGGCCCTCAAGTCGCCGGAG
TTCCTGTCCCAAGTGCCTATGAACAAGCGGGAGCTGCTGCTGGAGCGGGC
AAAGAAGGCGAAGCTGCCCACAGGACCCGGCTACGTGACGTTCCAGGACT
TTGTGAATGTGATGAGCGGCAAGCGGACACGTAGCTTTAAGTGCGCCGTA
CACCATCGAGATCGTGAAGTCTGCTCCGAAAACGATTTCCAGCTGGTGCT
AAACGAACCGCCACTCTTTCGCAAAATGGTGCACGCCGTGGCCTTGGAGA
TCCTGCCCGAGGAGCGGGATCGCAAGTACTACGCCGATCGCTACACCTGC
TGTCCGCCGCCTTTTTTCATCATCCTGGTTACTCTGGTGGAGCTGGGTTT
CTTTGTTTACCACTCAGTGGTCACGGGTGAGGCGGCGCCAAGGGGACCCA
TACCCTCGGACTCCATGTTCATCTACCGTCCCGATAAGCGTCACGAGATC
TGGCGCTTCCTCTTCTACATGGTACTCCATGCCGGGTGGCTGCATCTCGG
TTTTAACGTGGCAGTTCAGCTGGTTTTTGGGCTGCCACTGGAGATGGTTC
ATGGTTCCACGAGGATAGCCTGCATCTACTTCTCCGGGGTGCTGGCGGGA
AGCCTGGGCACTAGCATCTTTGACCCGGATGTGTTCCTTGTGGGCGCCAG
TGGTGGAGTTATACGCTTTGCTAAGCCGCCCACCTTGACAATGTGCTTCT
TCAACTATCCCCCAGATGCGTTATTGGAGTCATCAAGGCTGCTTCACATT
TCTGGTCTTCGTTTCCTTCGACTTTGGGCTTTGCCATCTTATGCCTCGCC
TTTGCTGGCGACGAACTGCAGCCTGGGAATCTATCGAAGTGATTTCCTTG
CCATTAGAATCAGGCGAAAACGGCGGGTGGCTGTTTCGTATGTGGCCCAA
TTTGGCTGGGGCATTGCTGCCTAACCTAATCCG

FMO12812.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
stet-RB 2380 CG33166-RB 350..1449 9..1125 4935 97.3 Plus
stet-RA 1898 CG33166-RA 171..967 312..1125 3420 96.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1476582..1476995 961..541 1710 97.6 Minus
3L 28110227 3L 1477050..1477288 549..311 1150 98.7 Minus
3L 28110227 3L 1487754..1487936 316..134 900 99.5 Minus
3L 28110227 3L 1488098..1488190 110..18 465 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:44:26 has no hits.

FMO12812.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:31 Download gff for FMO12812.5prime
Subject Subject Range Query Range Percent Splice Strand
stet-RB 343..1454 1..1133 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:07:10 Download gff for FMO12812.5prime
Subject Subject Range Query Range Percent Splice Strand
stet-RB 343..1454 1..1133 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:59 Download gff for FMO12812.5prime
Subject Subject Range Query Range Percent Splice Strand
stet-RB 343..1454 1..1133 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:59 Download gff for FMO12812.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1488098..1488195 12..110 97   Minus
3L 1476582..1476993 543..961 97 <- Minus
3L 1477057..1477287 312..542 99 <- Minus
3L 1487759..1487935 135..311 100 <- Minus
3L 1488006..1488029 111..134 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:07:10 Download gff for FMO12812.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1488098..1488195 12..110 97   Minus
arm_3L 1487759..1487935 135..311 100 <- Minus
arm_3L 1488006..1488029 111..134 100 <- Minus
arm_3L 1476582..1476993 543..961 97 <- Minus
arm_3L 1477057..1477287 312..542 99 <- Minus