FMO12813.5prime Sequence
1159 bp (1040 high quality bases) assembled on 2013-01-29
> FMO12813.5prime
CAGTCGACATGAGTGACAAAACCGGCCGAGGACGGAGTAACCCCTCCACC
AGCCGGATTCCTCGCAGCGCACAAAGTCCGCGCCAAGCCTCAGTGGTCCA
CTCGCCCAGGACAAACTGTGCCTTTCGCCCGATTTTTCACGAGAGGAGCA
CTCACGAGGACGACCAGGTGCTCACCCAAGAACTATGGAAGCTGGCGCGT
AAATCGGGCACCCTGAATCTTTCCAACAAAGCATTGGCCAGAGTGCCCAA
GCGACTGTACGACATTAACGAGGCGGATGCGGACAGCAAGGCCGTAAATC
TAGAGCAGCTAACGATTAAAGAGGAGGATGCCTGGTGGAACCAAGTGCCA
TTGAACAACCTGGACCTGAGCTCAAACACCTTAACGCACATATCGCCAAA
GATCGAGAATCTGCAATCACTTACCGTGCTTACGCTGCACGATAATGCTT
TGGTGGAGTTACCACCGGAGATCGGCAAGCTGGAAAAGCTAGTGCGCCTT
AATGTGAGCCACAACAAACTCAGCCAGCTGCCGCGTGCGATGTACAGTCT
ACCGGAGCTGCGGCACCTCAACATCTCGTACAACGAGTTCGTCGAACTTA
ATCCGGACATCAGTGACCTTCACATGCTTGAGTTTTTGGACGGTGGGCAT
AACAATATTCAATCCCTGCCCGGTGGCATTGGGTTCCTGGTGCGTCTAAC
TGCGCTCTTGTTGCCCTATAATCACATCAAGGAACTGCCGCCCGATCTTG
TTAACATGCGCTCTTTGCAAAAGATTGATCTGATGCATAATGATCTGACC
AGCTTGCCGGAGGATATGGGCCTTTTGAGAAAGCTGGATTGCCTTTATCT
GCAGCATAACGACATACTGGAACTGCCCGAGTTCGAGGGAAACGAGGCCT
TGAACGAGCTACATGCCAGCAATAATTTCATCAGATCATACCAAAAGCTA
TGTGTAGTAACTTGCCACACCTGAAGATACTGGATTTGCGGGACAATAAG
ATCACGGGCCTGCCCGACGAGCTGTGTGCCTGCCTGCGCATCTTAACCGT
CTCGATGTGTTCAATAAATACGATCAGCGGGCCTGCCAGTCCCATGTCTC
CTTGGGTCATCTGATAGCTGGCGGTGGAGGGAATTCCATAAGACAATCTA
AGCCCAATC
FMO12813.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:19:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| f-cup-RH | 2795 | CG9611-RH | 240..1386 | 5..1148 | 5295 | 98 | Plus |
| f-cup-RG | 2797 | CG9611-RG | 240..1386 | 5..1148 | 5295 | 98 | Plus |
| f-cup-RF | 2885 | CG9611-RF | 328..1474 | 5..1148 | 5295 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:19:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13699068..13699306 | 243..5 | 1195 | 100 | Minus |
| 3R | 32079331 | 3R | 13697834..13698039 | 639..434 | 1030 | 100 | Minus |
| 3R | 32079331 | 3R | 13698091..13698283 | 434..242 | 965 | 100 | Minus |
| 3R | 32079331 | 3R | 13697294..13697464 | 933..763 | 855 | 100 | Minus |
| 3R | 32079331 | 3R | 13697523..13697647 | 762..638 | 625 | 100 | Minus |
| 3R | 32079331 | 3R | 13697086..13697230 | 1079..932 | 475 | 91.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:19:47 has no hits.
FMO12813.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:39 Download gff for
FMO12813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| f-cup-RA | 324..1441 | 1..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:48 Download gff for
FMO12813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| f-cup-RF | 324..1441 | 1..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:42 Download gff for
FMO12813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| f-cup-RF | 324..1441 | 1..1118 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:42 Download gff for
FMO12813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13697292..13697464 | 763..934 | 99 | <- | Minus |
| 3R | 13697523..13697646 | 639..762 | 100 | <- | Minus |
| 3R | 13697835..13698038 | 435..638 | 100 | <- | Minus |
| 3R | 13698091..13698281 | 244..434 | 100 | <- | Minus |
| 3R | 13699068..13699308 | 1..243 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:48 Download gff for
FMO12813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9523014..9523186 | 763..934 | 99 | <- | Minus |
| arm_3R | 9523245..9523368 | 639..762 | 100 | <- | Minus |
| arm_3R | 9523557..9523760 | 435..638 | 100 | <- | Minus |
| arm_3R | 9523813..9524003 | 244..434 | 100 | <- | Minus |
| arm_3R | 9524790..9525030 | 1..243 | 99 | | Minus |
