FMO12815.5prime Sequence
1143 bp (1018 high quality bases) assembled on 2013-01-29
> FMO12815.5prime
CAGTCGACATGTCATCGCGAAGATGGTTCCACCCAACGATATCTGGCATC
GAAGCTGAGAAACTGCTGCAGGAGCAGGGATTCGACGGCTCCTTCCTCGC
CCGCCTCTCCTCCTCGAATCCGGGCGCCTTCACGCTCTCCGTGCGCCGCG
GCAACGAGGTGACCCACATCAAAATCCAAAACAATGGCGACTTCTTTGAT
CTCTACGGTGGTGAAAAGTTCGCCACACTGCCGGAACTGGTACAATACTA
CATGGAGAATGGCGAGCTAAAGGAGAAGAACGGCCAGGCCATCGAACTCA
AGCAGCCGCTGATCTGCGCCGAGCCCACCACGGAAAGATGGTTTCATGGC
AATCTTTCCGGAAAGGAAGCGGAAAAATTGATCCTGGAGCGGGGCAAGAA
TGGTTCGTTTCTCGTCCGTGAATCTCAGAGCAAGCCTGGCGACTTCGTCC
TTTCCGTGCGCACGGACGACAAAGTAACGCATGTCATGATTCGATGGCAG
GACAAGAAGTACGACGTCGGCGGCGGGGAATCCTTTGGCACCTTGTCGGA
ACTGATCGATCACTACAAGCGTAATCCCATGGTGGAGACGTGCGGAACCG
TGGTGCATCTGCGACAGCCATTCAACGCCACACGAATCACGGCGGCCGGC
ATCAATGCCCGGGTGGAACAGCTGGTCAAGGGAGGTTTCTGGGAGGAATT
CGAATCGCTGCAACAGGACAGTCGGGACACATTCTCGCGCAACGAGGGCT
ACAAACAGGAGAACCGCCTCAAGAATCGCTACCGCAACATATTGCCATAC
GACCACACGCGCGTCAAGCTGCTGGACGTGAGCATAGCGTGCCCGGAGCC
GAGTACATCAATGCCAACTACATACGGCTGCCCACCGACGGCGACCTGTA
CAACATGAGCAGCTCGTCGGAGAGCCTGAACAGCTCGTGCCCTCGTGCCT
CGCCTGCACGGCTGCCCAGACATAGCGGAACTGCTCCAACTGCCAGCTGC
AAAACAAGACGTGCGTGCAGTGCGCCGTGAAGATGCCATTCTGCCGTATA
GAACTGGGCACTGGCAGACGCAGTCGATCCTGGAACAGCACAGCGGGAGC
GAATCTCGCTCTTCATCGCCCTCTCCTCGGCTCTGGGGTTCGG
FMO12815.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:20:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| csw-RA | 4560 | CG3954-RA | 172..1311 | 9..1137 | 5150 | 97.5 | Plus |
| csw-RD | 7119 | CG3954-RD | 707..1833 | 22..1137 | 5085 | 97.5 | Plus |
| csw-RC | 4106 | CG3954-RC | 46..857 | 337..1137 | 3510 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:19:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2109725..2109984 | 795..1051 | 1075 | 96.9 | Plus |
| X | 23542271 | X | 2095008..2095199 | 21..212 | 960 | 100 | Plus |
| X | 23542271 | X | 2109227..2109415 | 493..681 | 930 | 99.5 | Plus |
| X | 23542271 | X | 2108378..2108543 | 336..501 | 830 | 100 | Plus |
| X | 23542271 | X | 2095269..2095396 | 210..337 | 640 | 100 | Plus |
| X | 23542271 | X | 2109481..2109600 | 679..798 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:20:00 has no hits.
FMO12815.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:40 Download gff for
FMO12815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csw-RA | 165..1215 | 2..1051 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:56 Download gff for
FMO12815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csw-RA | 167..1217 | 2..1051 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:51 Download gff for
FMO12815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csw-RA | 167..1217 | 2..1051 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:51 Download gff for
FMO12815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2095010..2095197 | 23..210 | 100 | -> | Plus |
| X | 2095270..2095396 | 211..337 | 100 | -> | Plus |
| X | 2108380..2108542 | 338..500 | 100 | -> | Plus |
| X | 2109235..2109414 | 501..680 | 100 | -> | Plus |
| X | 2109483..2109600 | 681..798 | 100 | -> | Plus |
| X | 2109729..2109984 | 799..1051 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:56 Download gff for
FMO12815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1989043..1989230 | 23..210 | 100 | -> | Plus |
| arm_X | 1989303..1989429 | 211..337 | 100 | -> | Plus |
| arm_X | 2002413..2002575 | 338..500 | 100 | -> | Plus |
| arm_X | 2003268..2003447 | 501..680 | 100 | -> | Plus |
| arm_X | 2003516..2003633 | 681..798 | 100 | -> | Plus |
| arm_X | 2003762..2004017 | 799..1051 | 97 | == | Plus |
