FMO12816.5prime Sequence
999 bp (995 high quality bases) assembled on 2013-01-29
> FMO12816.5prime
CAGTCGACATGGGAATCTTTGGGCAGTCGTCGCCATTCGACGCCGACGTG
GAAAAGGCCACCAGCGAAACTAATACCAACGACAACTGGTCTCTGATTTT
GGATGTATGCGACAAGGTAACGACCAATCCCCGCCTGGCCAAGGATTGCC
TGAAGGCGGTGATGCGCCGCATGGGCCACACCGATCCTCATGTGGTGATG
CAGGCGATTACGCTTTTGGACGCCCTGTCCAACAACTGCGGAAAACCGCT
CCATTTGGAGGTGGCTTCACGGGATTTCGAGACGGAGTTCCGCCGCCTGT
TGGCCAAAGCACAGCCAAAGGTTTCACTGAAAATGCGCCAAGTGCTGAAG
AACTGGGCTGAAAACGACTATAAGAACGATCGAGAGCTCGACTTGATACC
CGCACTCTATGCCAAGCTGCGCCAAGAGGGATATGATTTCAAGAATCTTG
GCGATAAGACTAGCAAGACTGTTGCCGAAAAGGCCGCCGCCCTGCCCAAA
GATCCGAATGTGGTCAGCAGCCAGCAGGAAGAGGATGACATCGCCAAGGC
CATCGAATTGTCGCTGAAGGAGAACAAGGGCAGTCCAAAGACTGGGAGTG
TAGCAAGTACCGGCACCGCCAGTGCCTATCCCTCATTGTATCCATCTTTC
GCTGGAACCGGCTCGAGTGCACCGAGCGCCGAAGCCAGTTCCGCACCAGC
GCCAGAGCCGAGAAAGGTTCGAGCTCTGTACGATTTCGAAGCTGCCGAGG
AAAACGAATTGACCTTCTTTGCCGGCGAGATCATTCATGTGCTGGATGAT
AGTGATCCAAACTGGTGGATGGATACATCAACGCGGCGAGGGTCTCTTCC
CCTCGAACTTTGTCACTGCCGATCTGTCCGTCGATCCCGAGCGGCTGGAC
ATCAATCAGCAGCATAGGTCGGCCGCCGCAGCCGGGCAACGATGAGTTGG
ATTCCGCTGCGGCACTGCCGCAAAGACTGAAGCCGCAGCAGCTGGCGGC
FMO12816.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:20:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stam-RA | 2854 | CG6521-RA | 300..1287 | 9..994 | 4785 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:20:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10859700..10860373 | 323..994 | 3100 | 98.7 | Plus |
| 2L | 23513712 | 2L | 10859369..10859647 | 51..329 | 1395 | 100 | Plus |
| 2L | 23513712 | 2L | 10858835..10858877 | 9..51 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:20:06 has no hits.
FMO12816.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:41 Download gff for
FMO12816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stam-RA | 301..1299 | 1..999 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:00 Download gff for
FMO12816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stam-RA | 293..1291 | 1..999 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:54 Download gff for
FMO12816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stam-RA | 293..1291 | 1..999 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:54 Download gff for
FMO12816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10858828..10858877 | 1..51 | 92 | -> | Plus |
| 2L | 10859370..10859647 | 52..329 | 100 | -> | Plus |
| 2L | 10859707..10860377 | 330..999 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:00 Download gff for
FMO12816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10858828..10858877 | 1..51 | 92 | -> | Plus |
| arm_2L | 10859370..10859647 | 52..329 | 100 | -> | Plus |
| arm_2L | 10859707..10860377 | 330..999 | 98 | | Plus |
