FMO12818.5prime Sequence
1154 bp (1040 high quality bases) assembled on 2013-01-29
> FMO12818.5prime
CAGTCGACATGTATGCCGCCTCGATCCTGATCCTGCACCTGACTTGGGCC
GTGGCCACGATCGCGGCCAACGGTGCCGGCCATAATGGCCCGGTGGCATC
CGGAGCAGGGCCTAACGGATTGCAGTGCCAGCCCATCGCCGTGTCCGCCT
GCCAAGGCCTCGGCTACAACATGACCGCACTGCCCAACCTGGCAGGTCAC
ACCAATCAGCTGGAGGCTGAGCTCCAGATTGCCAAACTGGTGCCACTAAT
AGAATCCGGCTGCTCGCGTCGCGCCCGCTTTTTGCTCTGCTCGTCTCTGT
TTCCGCTGTGCACGCCGGATGTGCCACGCCCCGTTGCCGCCTGCAAATTG
CTGTGCGAGACTGTTAGGGGCGAGTGTATGGAAAACGCTCCGCCGGAACT
GATGGAGCTGTGGCCTTCGTTCCTTAACTGCGACGGACTGCCGCAGCCGG
AGAAGCACGAGTTGTGCATGCAGATTCCACAGGAGGTGGCTGTGCCAGGC
GGGAGTCCAAGTGGTCCGCCCACCACTGGTTCACCTGGCGTCGAAGATCA
CCCGCAGACGTACCGCTTTTGGAAAAGCGGAGCATCTCCCACCTCTGACT
TGGCTGGCGTCTTGTGCCCGCAAAACTTTAGCGGCAGTCCCTTTAATCCG
GAGGAGTGCGTGCCCCAGTGTCAGCGGGACGCCTTCCACACGAGCTCTCA
GAAGAAGACGTCTGAGACCCTCATTCTAGGCCTCTCGGCCGTCTGCTTCG
TCCTGACACTGTTCGCCTTGGTGACCTTCTGGGCGGAGCCCACCAGGTTT
GGCTACCCCGAGAGACCAGTGCTCTTCCTGTGCCTGTGCTACAACCTCTT
CAGCGTGTGCTATCTGGAGCGAATCGTGTTCCACAATCAAGCAAGGATGC
ATGACGTCGAGCTGCAATGGCGGCTGATGCGACCGGGTTGCTTGCTGACG
CCCCTTGCCTGGCCTCCTACATACCACCTCCTATTTAAGGCCTGTGTGCA
GCCAGCTGGTGGCTGATATTTGCCTGTGCTTCTACCTGTCCTTCCACAAA
AAGTGTTCAGGGGGGGCCTGGAAAGAGTCGGCCTGTTCCCGTCTTGCCTG
GGGGCACCGCTGGCTCCAATGCGCCCTGTCGTCTGAGAAAGGGTGCTCGA
AGTG
FMO12818.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fz3-RC | 3250 | CG16785-RC | 285..1399 | 9..1114 | 5170 | 98.2 | Plus |
| fz3-RA | 2249 | CG16785-RA | 204..1318 | 9..1114 | 5170 | 98.2 | Plus |
| fz3-RB | 2304 | CG16785-RB | 474..1373 | 224..1114 | 4095 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:20:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 781473..782305 | 225..1055 | 3955 | 99.4 | Plus |
| X | 23542271 | X | 770229..770447 | 9..227 | 1095 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:20:12 has no hits.
FMO12818.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:41 Download gff for
FMO12818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz3-RA | 195..1261 | 1..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:03 Download gff for
FMO12818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz3-RA | 197..1263 | 1..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:58 Download gff for
FMO12818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fz3-RA | 197..1263 | 1..1065 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:58 Download gff for
FMO12818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 770222..770447 | 1..227 | 98 | -> | Plus |
| X | 781476..782318 | 228..1067 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:03 Download gff for
FMO12818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 664255..664480 | 1..227 | 98 | -> | Plus |
| arm_X | 675509..676351 | 228..1067 | 98 | <- | Plus |
