FMO12819.5prime Sequence
743 bp (743 high quality bases) assembled on 2013-01-29
> FMO12819.5prime
CAGTCGACATGAATCGACGCAACAAGCGGACGTCGTACTACCAATACGAA
GTATACCTAGACTTCATGGAGGAGAATCCCCCGATGTCGGCCAACAAACT
GAGTCGCACCCAGGACGGCAAGAAGTGGAAGGAGCTCAGCGATCTGCTAA
ACAAGTGCTCCACGGGTCCCACTTTGTCGCCCGAGGAATGGCGAAAGCGC
CTCAACGACTGGAAGAACAGCACGCGCTCCAAATACCGACGCAGCATCAA
CTCGGATGACAAGAGCAATGCAATGACTCCTCTGGAGAACAGAGCCCTGC
AGATCTTCTCCTTAGAACCGAATTTTCGCGAGGGAATTTCGATGCGCCTG
CACGAACTGATGGAGGAGCAAGAGGAACTGGATGAAGAAGAGAATGAGAA
CCTGGAGGAGTTGGTGGATGAGGAGGAGGAGGAGGAGGTGCAGTATCTGC
AGTTCATAGCAGAGCCTCACGAGCAAGCCAACCCAACGATCATCAATGGT
CACAGTGCCGCGAAAAAGCTAAGGCTCGATGGTTCCAGTGAGATTATCTA
CGAAGTCGCGGATGTCACATCTGATCAATCTGCCGCGAAAGAACCGTCTG
CCTTCTATGGAGAGAAAATCCAGGAGCAGCTGAAACGCATTTCGGACATA
CACGAGGCATCGCTGCACTTTAAGATAGCCCGCTTCAAGTACAATAATCC
CGGATTCGAGTACGTTCCGGAATTAGCAAGCTTTCTAGACCAT
FMO12819.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15107-RA | 1106 | CG15107-RA | 105..821 | 9..725 | 3555 | 99.7 | Plus |
| CG15107-RB | 1118 | CG15107-RB | 105..833 | 9..725 | 3425 | 98.1 | Plus |
| prod-RA | 1597 | CG18608-RA | 260..386 | 119..245 | 290 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:20:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18971829..18972188 | 555..196 | 1770 | 99.4 | Minus |
| 2R | 25286936 | 2R | 18972245..18972433 | 197..9 | 945 | 100 | Minus |
| 2R | 25286936 | 2R | 18971594..18971765 | 725..554 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:20:18 has no hits.
FMO12819.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:42 Download gff for
FMO12819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15107-RA | 1..726 | 5..731 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:06 Download gff for
FMO12819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15107-RA | 105..825 | 9..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:02 Download gff for
FMO12819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15107-RA | 105..825 | 9..731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:02 Download gff for
FMO12819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18971590..18971763 | 556..731 | 98 | <- | Minus |
| 2R | 18971829..18972186 | 198..555 | 99 | <- | Minus |
| 2R | 18972245..18972433 | 9..197 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:06 Download gff for
FMO12819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14859334..14859691 | 198..555 | 99 | <- | Minus |
| arm_2R | 14859095..14859268 | 556..731 | 98 | <- | Minus |
| arm_2R | 14859750..14859938 | 9..197 | 100 | | Minus |
