FMO12820.5prime Sequence
995 bp (995 high quality bases) assembled on 2013-01-29
> FMO12820.5prime
CAGTCGACATGTGGTCTAGGCTTATTCAAATATTTCGACCCCTCAGAAGT
TTTCGAATGTCGCACTCACCGCCGCCGGCTAGCAATTGCGAGGAGGCTCT
CATCCAGCTGAAAAACTTTGGATATGCATTCGATGGAGAAGGAGTGCTGC
GCAAAGTCGATCCCGCCACTGGGGAGCCTGGCAAGGAACTCTTTTCCTAC
AACGTCAGCGACGACGCCGCCGAAAACGAGAAGCACTACCAGAAGCTAGC
CAACCAAATCCCAGAAATTGTCTACGCTTTGCTGGAGAAAAACGGTCTTA
GTCGCACCTACATCCCTTTTGACCAGCCTCCAGAGCGGTCTTCGTTTGTA
TTCTCGCAACCGGCAAAGCTGTCGCAGTCCAAAAAGTTGCTAGTCCTCAT
CCATGGCAGTGGATACGTTAAAGCCGGACAGTGGGCCAGAAGTTTAATTA
TTAACAATTCCTTGGACCACGGTACCCAGCTGCCTTATGTGCGACAGGCC
CAAAAACTGGGATACGATCTCCTCATCACCAATGCCAACGATTGCACACG
ATTCTACAATGGTAAGGAGAATCCCATCAAGGGCGTCAATACGTCCGTAG
AGCACGTTAAATATGTGTGGAAGAATATTGTATTGCCCGCGAAACCCGAG
AGTGTGGCCATTGTGGCCCACAGTTATGGTGGCAGTCTTACTCTTGATTT
GGTGGAGCGGTTTCCGGATTTCTTTAAAGAATCCGTTTTTGCCATTGCCT
TCACTGATGCCGCCATGGGAAGTCCCCAAGCGAAGAACAAGGAGTACCTG
TGCGATGTGGCCTGCGATTGGGTTGCCAGCAACACACCCTTAGACACACC
CGTTTCACAGTCAAAGAGCAGCATCCGGAGGATTTCCGCTGGCCACACTA
AGCACGAATGACCTCTTACTCGGCCATCGATTCCGTGTTCAGTTCATTGA
GAAAGTATGAACAGCGAGCGAATAAGAAGCAGCTTTCTAGACCAT
FMO12820.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:20:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10038-RA | 1212 | CG10038-RA | 142..1116 | 9..979 | 4785 | 99.6 | Plus |
| CG10038-RB | 1134 | CG10038-RB | 102..1038 | 47..979 | 4595 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:20:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12349418..12349682 | 705..441 | 1325 | 100 | Minus |
| 3R | 32079331 | 3R | 12349083..12349375 | 979..691 | 1270 | 98 | Minus |
| 3R | 32079331 | 3R | 12349795..12349982 | 442..255 | 940 | 100 | Minus |
| 3R | 32079331 | 3R | 12350374..12350503 | 138..9 | 650 | 100 | Minus |
| 3R | 32079331 | 3R | 12350195..12350312 | 254..137 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:20:21 has no hits.
FMO12820.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:43 Download gff for
FMO12820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10038-RA | 104..1081 | 3..979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:09 Download gff for
FMO12820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10038-RA | 104..1081 | 3..979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:04 Download gff for
FMO12820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10038-RA | 139..1116 | 3..979 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:04 Download gff for
FMO12820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12349083..12349364 | 702..979 | 98 | <- | Minus |
| 3R | 12349422..12349680 | 443..701 | 100 | <- | Minus |
| 3R | 12349795..12349982 | 255..442 | 100 | <- | Minus |
| 3R | 12350195..12350310 | 139..254 | 100 | <- | Minus |
| 3R | 12350374..12350506 | 3..138 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:09 Download gff for
FMO12820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8174805..8175086 | 702..979 | 98 | <- | Minus |
| arm_3R | 8175144..8175402 | 443..701 | 100 | <- | Minus |
| arm_3R | 8175517..8175704 | 255..442 | 100 | <- | Minus |
| arm_3R | 8175917..8176032 | 139..254 | 100 | <- | Minus |
| arm_3R | 8176096..8176228 | 3..138 | 97 | | Minus |
