Clone FMO12821 Report

Search the DGRC for FMO12821

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:128
Well:21
Vector:pMK33-CFH-BD
Associated Gene/TranscriptNeos-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12821.5prime Sequence

1103 bp (974 high quality bases) assembled on 2013-01-29

> FMO12821.5prime
CAGTCGACATGTCTGATCCAGGAAGCGCCGGCTACAACATAACCAAGGAT
CCGGCCCTGGCAAAGAGTCGAATCTTCTTGGGCAACCTGCCGGTTTGCAC
GCGCGAGGAGCTGGTGAGCATTTGCCAGCCATATGGCAAAGTGCTCGGTT
CGATGGTCCAGAAGAACTACGGATTCGTGCAGTTTGAAACGGAGGAGCTG
GCCAATAAAGCCGCCTCCGCCCTGCACAAGTCCACTTTTAAGCAAAACAT
GCTCACCGTACGCAACGCCAGCATTAAATCGAAGGCGGCCAATGCTATCG
CCAAAAGAAATTCAAATCAAGGAGGCCAGGTGACAGTTCAGGGTGGACTT
GTGATGTCAGCGGCGGCAGCGGCAGCAGGTCAACCCCTCATCAATGATTG
CGAGATCATAGTCCAAAATCGCGAGAATACCAAATACGCAGAATACATTG
AGGAGCGGCTAAAGAATTCCAGTCTGCGCGTGGATGTACTCTTTCCCAAC
GAGGACGTCTTGCTAGGCAAGGTCCTGGCCAACATCTCTTCGCGCGGCTG
CTTGTATGCGGTATTGGTCACGCCGCAGCACGAGGAACACAACAGCATCA
CAGTAAACATTTTGTATGGCGTACCCGCTGAGCATCGCAACATGCCGCTG
GAGGACGCCATCACCCTGATCTCCACCGATTTTAGGCTCAAAAAACAGCG
CGACGCTGTCGTCTTACCGCCGTCAACATCCATACACAAGGGACAGCGAC
GACATCCCCAGGAAATGCAGGGGCTGCTGGAAAGGCTGGCAGACAATCAT
CCATTGACCGCGTCGCAGTACGAGGTGATTCTTAAGTACCTCGAAGCGAA
CGCGAGGAGCAACTGAAGCGAGAGGTGGGCGAGGACCATGCTCTGGCCAA
GCTAAAAGCTCCCGATCCAGAGATCGAGCTGCAGAAGAAAATTCTTAGCA
TCATGACAAGCCGGCAGTTACGATGTCACCAGCGAGCTCATGTATCTCAC
TTTCGAGGAAGTCAAGGAGGACAGAAGGCTAATTGTAGCTACTTGCCTGA
AGATCAGATGGTGGCGGCCCTGGAATGGTTACAACTCGGATCTCGAACTG
ATT

FMO12821.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
Neos-RB 1260 CG8614-RB 59..1147 9..1094 5095 98.3 Plus
Neos-RA 1449 CG8614-RA 248..1336 9..1094 5095 98.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7242360..7243026 431..1094 2835 97 Plus
3L 28110227 3L 7241875..7242296 9..430 2110 100 Plus
Blast to na_te.dros performed 2014-11-28 18:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 1768..1832 250..315 111 65.2 Plus

FMO12821.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:43 Download gff for FMO12821.5prime
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 181..1281 4..1103 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:14 Download gff for FMO12821.5prime
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 245..1345 4..1103 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:07 Download gff for FMO12821.5prime
Subject Subject Range Query Range Percent Splice Strand
Neos-RA 245..1345 4..1103 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:07 Download gff for FMO12821.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7241872..7242296 4..430 99 -> Plus
3L 7242360..7243035 431..1103 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:14 Download gff for FMO12821.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7234972..7235396 4..430 99 -> Plus
arm_3L 7235460..7236135 431..1103 96   Plus