FMO12826.5prime Sequence
1085 bp (1000 high quality bases) assembled on 2013-01-29
> FMO12826.5prime
CAGTCGACATGTGGATCGCTCTGCTTGGGTCTTCACTTTTGATTGGGGCT
CTTTGGCTCCTGCTGAGACAACTTAATAAAACGTATTTTATTCTTTCATT
ATGCAAACGAGTGCGAACAGCGGATGGAAGTCCATTGGAAAGCAAAGTGT
TCGTTGTTCCCGGAAAAACGCGATTTGGCAACAATTTGGATCTACTCAAT
TTAACGCCAGCTAATATTTTTAGCTACATACGAGAGTCCACTGCCAAAGC
CAATGGACAAAATTATATATGGAATTTCCTATTTGCACCAGAATATAATA
TTGTTCGTGCCGAAGACGCTGAAGAAATATTTCAGAGCACCAAAATCACT
ACAAAGAATATGTCTTATGAATTGATAAGACCATTTCTTGGAGACGGGCT
GCTGATAAGCATAGACCAGAAATGGCACACAAGAAGAAAAACTTTGACCC
CAGCTTTTCATTTTAATATTCTGCAGTCTTTTCTCTCTATTTTTAAAGAA
GAGAGCAAAAAGTTTATCAAAATACTGGACAAGAACGTTGGCTTCGAGCT
TGAACTTAACCAGATAATTCCACAATTTACTCTAAACAATATTTGCGAAA
CTGCCCTAGGCGTAAAACTAGATGACATGTCGGAAGGAAACGAGTACAGA
AAGGCCATCCATGACTTTGAAATAGTTTTCAATCAGCGCATGTGCAATCC
GCTCATGTTCTTCAACTGGTACTTCTTCCTTTTCGGAGATTATAAAAAAG
TATTCCAGGATACTGCGTACAATTCACGGCTTCTCGAGCGGTATCATTCA
ACGCAAAAGGCAGCAATTCAAGCAGAACAACTTGGCCCAGTTGATGAATT
TGGCAAGAAGCAGCGTTACGTCATGCTGGACACTCTTTTGGCAGCTGAGC
GGAGGGCAGATCGATCATCATGGATCTGCGATGAAGTCAATACCTTATTG
TCGGGGGAATACGATACCACATCACCAGTCTAATCTTTACACTTGTATTG
TGCTCTGCATGCCGATGTTCAGAGCGGTGCTCCAAGAAGCTACCAGAACT
TTCCGAAGATATTGATTGAAGTCCGTATGGTTCCA
FMO12826.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:20:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4ac3-RA | 1606 | CG14031-RA | 49..1130 | 9..1085 | 4845 | 97.2 | Plus |
| Cyp4ac1-RA | 1666 | CG14032-RA | 34..1019 | 9..990 | 1350 | 76.8 | Plus |
| Cyp4ac2-RB | 1709 | CG17970-RB | 137..669 | 102..634 | 395 | 72.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:20:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5269360..5269836 | 597..1066 | 1675 | 93.9 | Plus |
| 2L | 23513712 | 2L | 5268797..5269003 | 208..414 | 1035 | 100 | Plus |
| 2L | 23513712 | 2L | 5268546..5268747 | 9..210 | 1010 | 100 | Plus |
| 2L | 23513712 | 2L | 5264855..5265252 | 597..990 | 540 | 79.2 | Plus |
| 2L | 23513712 | 2L | 5269192..5269300 | 489..597 | 530 | 99.1 | Plus |
| 2L | 23513712 | 2L | 5269051..5269135 | 412..496 | 425 | 100 | Plus |
| 2L | 23513712 | 2L | 5264034..5264216 | 9..191 | 300 | 77.6 | Plus |
| 2L | 23513712 | 2L | 5264319..5264496 | 234..411 | 290 | 77.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:20:58 has no hits.
FMO12826.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:47 Download gff for
FMO12826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4ac3-RA | 30..1045 | 9..1018 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:31 Download gff for
FMO12826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4ac3-RA | 49..1064 | 9..1018 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:22 Download gff for
FMO12826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4ac3-RA | 49..1064 | 9..1018 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:22 Download gff for
FMO12826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5268546..5268747 | 9..210 | 100 | -> | Plus |
| 2L | 5268800..5269003 | 211..414 | 100 | -> | Plus |
| 2L | 5269054..5269135 | 415..496 | 100 | -> | Plus |
| 2L | 5269200..5269300 | 497..597 | 100 | -> | Plus |
| 2L | 5269361..5269787 | 598..1018 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:31 Download gff for
FMO12826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5268800..5269003 | 211..414 | 100 | -> | Plus |
| arm_2L | 5269054..5269135 | 415..496 | 100 | -> | Plus |
| arm_2L | 5269200..5269300 | 497..597 | 100 | -> | Plus |
| arm_2L | 5268546..5268747 | 9..210 | 100 | -> | Plus |
| arm_2L | 5269361..5269787 | 598..1018 | 95 | | Plus |
