Clone FMO12827 Report

Search the DGRC for FMO12827

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:128
Well:27
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG6805-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12827.5prime Sequence

1088 bp (1015 high quality bases) assembled on 2013-01-29

> FMO12827.5prime
CAGTCGACATGGTTACGGCCACGGCGATTGCGGATCTGTGCATCTTCCTT
TTGACCTGGAACGTGGGCACCCATACGCCGCGAAATCAGGATCTGAGCTC
CCTTTTGTCCCTTAATGGCACCACCACTTGTCCGGATAACCAGCTGCCCG
ATATCTATGTAATCGGATTCCAGGAGGTGAGCACCACACCGCAGGTGCTA
AAAATCTTCAATGACGATCCGTGGGTGCTGAAGATCGCGGACTCTCTGAG
CGATCACCAGTTCGTAAAGGTGGACTCGAAGCAGCTGCAGGGAATTCTTA
TAACCATGTTCGCACAGCACAAGCACATCCCGCACATGAAAGAAATCGAG
ACAGAAGCCACGCGCACGGGACTTGGAGGGCTGTGGGGCAACAAGGGTGC
CGTAAGCATTCGACTTTCGCTCTACGGAACTGGCGTCGCATTCGTCTGCT
CCCATCTGGCGGCGCACGATGAGAAGCTGAAGGAGCGCATCGAAGACTAT
CACCAAATCGTGGACAATCACAAGTACAATGCGCAGGGATATCGCCGGAT
ATTCGATCACGACTTTGTCTTTTGGTTTGGCGATCTTAACTTCCGTCTCT
CCGGCGATATGTCCGCTTGGGATGTCCGCACGGATGTGGAGAACCAGCGA
TACGCTGATCTGCTCAAGCTCGACCAGTTGAATCTGCTCCGGGAGAAGGG
AAACGCCTTCAGCTTGCTGGAGGAGCAGCAGCCCAACTTTGCGCCCACTT
TTAAGTTCGTGGAAAGCACTAATGACTACAACTTGAAGCGGCGACCCGCC
TGGTGCGATCGGATTTTGCATCGCGTGCAGAGCAACATTTATCCGGGCAT
TACCCTGAGTGCCAACCAGCTGTCTTATCAGTCCCACATGGACTACACTC
TCTCGACCACAAGCTCGTATCGGCGACATTCACTACAGGTCGAGGCTGCC
CACCAGACCTACACGACGAGGAGCTCCACGAAATGACGCACCGATCTGCC
TCATCTCGGCGACGCCAATGTTAGTCTATCCTTCGCCATTTGGTGTTTTG
AGCCTGGTCCTATACTCACCTGCAGCTCTAGACCATCA

FMO12827.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6805-RA 1770 CG6805-RA 311..1377 9..1068 4995 98.5 Plus
CG6805-RB 1696 CG6805-RB 311..1325 9..1018 4890 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17005761..17006507 9..755 3735 100 Plus
2R 25286936 2R 17006787..17007075 754..1036 1085 96.5 Plus
Blast to na_te.dros performed on 2014-11-28 18:21:04 has no hits.

FMO12827.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:47 Download gff for FMO12827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 309..1378 9..1071 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:35 Download gff for FMO12827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 311..1380 9..1071 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:26 Download gff for FMO12827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6805-RA 311..1380 9..1071 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:26 Download gff for FMO12827.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17005761..17006507 9..755 100 -> Plus
2R 17006789..17007111 756..1071 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:35 Download gff for FMO12827.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12893266..12894012 9..755 100 -> Plus
arm_2R 12894294..12894616 756..1071 94   Plus