Clone FMO12828 Report

Search the DGRC for FMO12828

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:128
Well:28
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12828.5prime Sequence

924 bp (924 high quality bases) assembled on 2013-01-29

> FMO12828.5prime
CAGTCGACATGCCCGATAGTTGTACGGCGGACCTACGAAGTCGCCGCCGC
GAAAATCCAATCGACCGCAACGGCAATATTGGCGGCACAGGCAAGGAGCA
GGCGACAAGCACCAGGCCTAAGCTGACAACCGAATATACCCAACGGACTA
ACGAAATGACTGCGAGCAAGGAAGGTCAAGAATCCAGGCGAACCCTCAGC
GACAGTTCCGCAGAGGACGTCAGGAATACAGGATCGAGGACCAGGACCAA
CGACGACGAAATGTGGCGCAATGAACTTGCTATGAACACGGACAGCAGCT
CCGTTCAGCCAGAAAAGCGAGAGGAACGAAGCCACAGAACAGGAAACTCT
AATGCGAAGCTCAGCGATGCCGTAGATGTTGTTCTTCGCGTTCTCCTCGT
CATTACCTTCTTCAAGTTGGAGACGATGACAGCATTCAAACGGGAAATCC
ACGAGGAAGAGCTGTGGCTATACAAGAACCCAAGGCGACCGGACATTGTC
AGGGGCGGGGAGCTGCTCTTCTGGGTGATAGTGGCTCCCTTTCTGGTCAC
TATCGCCTTCTACTGGTACACAAGAGACAGGCGGCTCTGCATCGCTGTGA
TACCTCTGTTTATCGCACTGCTGGTTGCAGTTAGTCGCACCTGCGACTAC
CACCACCACTGGCAGGATGTGACCATCGGCGGGCTGATTGGCCTGTTTGC
AGGCTATATAAGCTACACACAATACTATCCCTCCATCTTCTGCCCTGATG
CCGGCATACCACTGGTCAGGTGGCCCAGCAGAGAGGGAAGCCAGTACCAG
CGACTGTCTGGAAAGGACGACAATGGCAGTCGTGGTCCCACCATCTCGAT
GGTGGGGATGCGGTGCGGAGACCTCTGCTCGCTGACAAGGAGAGTCCAAA
TGGTACGCAAGCTTTCTAGACCAT

FMO12828.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-RE 1509 CG12746-RE 196..771 9..584 2880 100 Plus
CG12746-RD 1381 CG12746-RD 161..643 102..584 2415 100 Plus
CG12746-RB 1339 CG12746-RB 119..601 102..584 2415 100 Plus
CG12746-RE 1509 CG12746-RE 1103..1431 580..906 1595 99.4 Plus
CG12746-RD 1381 CG12746-RD 975..1303 580..906 1595 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5566086..5566398 100..412 1565 100 Plus
3R 32079331 3R 5567029..5567357 580..906 1545 99.4 Plus
3R 32079331 3R 5566467..5566638 413..584 860 100 Plus
3R 32079331 3R 5565361..5565454 9..102 470 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:21:10 has no hits.

FMO12828.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:48 Download gff for FMO12828.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 190..773 3..585 99 <- Plus
CG12746-RE 1109..1441 586..915 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:38 Download gff for FMO12828.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 190..773 3..585 99 <- Plus
CG12746-RE 1109..1441 586..915 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:29 Download gff for FMO12828.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 190..773 3..585 99 <- Plus
CG12746-RE 1109..1441 586..915 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:29 Download gff for FMO12828.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5566467..5566634 413..580 100 -> Plus
3R 5565355..5565453 3..101 97 -> Plus
3R 5566088..5566398 102..412 100 -> Plus
3R 5567030..5567367 581..915 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:38 Download gff for FMO12828.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1391077..1391175 3..101 97 -> Plus
arm_3R 1391810..1392120 102..412 100 -> Plus
arm_3R 1392189..1392356 413..580 100 -> Plus
arm_3R 1392752..1393089 581..915 98   Plus