FMO12828.5prime Sequence
924 bp (924 high quality bases) assembled on 2013-01-29
> FMO12828.5prime
CAGTCGACATGCCCGATAGTTGTACGGCGGACCTACGAAGTCGCCGCCGC
GAAAATCCAATCGACCGCAACGGCAATATTGGCGGCACAGGCAAGGAGCA
GGCGACAAGCACCAGGCCTAAGCTGACAACCGAATATACCCAACGGACTA
ACGAAATGACTGCGAGCAAGGAAGGTCAAGAATCCAGGCGAACCCTCAGC
GACAGTTCCGCAGAGGACGTCAGGAATACAGGATCGAGGACCAGGACCAA
CGACGACGAAATGTGGCGCAATGAACTTGCTATGAACACGGACAGCAGCT
CCGTTCAGCCAGAAAAGCGAGAGGAACGAAGCCACAGAACAGGAAACTCT
AATGCGAAGCTCAGCGATGCCGTAGATGTTGTTCTTCGCGTTCTCCTCGT
CATTACCTTCTTCAAGTTGGAGACGATGACAGCATTCAAACGGGAAATCC
ACGAGGAAGAGCTGTGGCTATACAAGAACCCAAGGCGACCGGACATTGTC
AGGGGCGGGGAGCTGCTCTTCTGGGTGATAGTGGCTCCCTTTCTGGTCAC
TATCGCCTTCTACTGGTACACAAGAGACAGGCGGCTCTGCATCGCTGTGA
TACCTCTGTTTATCGCACTGCTGGTTGCAGTTAGTCGCACCTGCGACTAC
CACCACCACTGGCAGGATGTGACCATCGGCGGGCTGATTGGCCTGTTTGC
AGGCTATATAAGCTACACACAATACTATCCCTCCATCTTCTGCCCTGATG
CCGGCATACCACTGGTCAGGTGGCCCAGCAGAGAGGGAAGCCAGTACCAG
CGACTGTCTGGAAAGGACGACAATGGCAGTCGTGGTCCCACCATCTCGAT
GGTGGGGATGCGGTGCGGAGACCTCTGCTCGCTGACAAGGAGAGTCCAAA
TGGTACGCAAGCTTTCTAGACCAT
FMO12828.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12746-RE | 1509 | CG12746-RE | 196..771 | 9..584 | 2880 | 100 | Plus |
CG12746-RD | 1381 | CG12746-RD | 161..643 | 102..584 | 2415 | 100 | Plus |
CG12746-RB | 1339 | CG12746-RB | 119..601 | 102..584 | 2415 | 100 | Plus |
CG12746-RE | 1509 | CG12746-RE | 1103..1431 | 580..906 | 1595 | 99.4 | Plus |
CG12746-RD | 1381 | CG12746-RD | 975..1303 | 580..906 | 1595 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:21:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5566086..5566398 | 100..412 | 1565 | 100 | Plus |
3R | 32079331 | 3R | 5567029..5567357 | 580..906 | 1545 | 99.4 | Plus |
3R | 32079331 | 3R | 5566467..5566638 | 413..584 | 860 | 100 | Plus |
3R | 32079331 | 3R | 5565361..5565454 | 9..102 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:21:10 has no hits.
FMO12828.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:48 Download gff for
FMO12828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 190..773 | 3..585 | 99 | <- | Plus |
CG12746-RE | 1109..1441 | 586..915 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:38 Download gff for
FMO12828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 190..773 | 3..585 | 99 | <- | Plus |
CG12746-RE | 1109..1441 | 586..915 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:29 Download gff for
FMO12828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12746-RE | 190..773 | 3..585 | 99 | <- | Plus |
CG12746-RE | 1109..1441 | 586..915 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:29 Download gff for
FMO12828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5566467..5566634 | 413..580 | 100 | -> | Plus |
3R | 5565355..5565453 | 3..101 | 97 | -> | Plus |
3R | 5566088..5566398 | 102..412 | 100 | -> | Plus |
3R | 5567030..5567367 | 581..915 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:38 Download gff for
FMO12828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1391077..1391175 | 3..101 | 97 | -> | Plus |
arm_3R | 1391810..1392120 | 102..412 | 100 | -> | Plus |
arm_3R | 1392189..1392356 | 413..580 | 100 | -> | Plus |
arm_3R | 1392752..1393089 | 581..915 | 98 | | Plus |