FMO12830.5prime Sequence
809 bp (809 high quality bases) assembled on 2013-01-29
> FMO12830.5prime
CAGTCGACATGGAGAAGAGAATAGAACTGGAAAGACGCGCACGCAAAGTA
AATCAGATCACAGAGCTGAATCTGGACAACTGCCGTAGTACAAGCATCGT
TGGCCTTACAGATGAATACACAGCCTTGGAATCGCTTAGCTTGATCAACG
TGGGTCTCACCACACTGAAAGGTTTCCCCAAGCTGCCCAATTTAAAGAAG
CTCGAACTGTCCGACAATCGGATTTCGAGTGGCCTCAACTATCTGACCAC
TAGCCCCAAACTGCAATATCTCAACTTGTCTGGCAACAAGATAAAGGATC
TGGAAACCCTGAAGCCCCTGGAGGAGTTTAAAAATCTGGTTGTTCTGGAT
TTGTTTAATAACGACGCTACTCAAGTGGATAATTACCGCGAGAAGATCTT
CAAGATGTTGCCATCGTTAAATTTCCTAGATGGATTTGATTGCAACGACG
AGGAGGTGCAATCTGATGGCGATGATGATGATGAGGTCAACGGCAACGAT
TCCGACGAAGTGGGAGTTTCCGACGAAGATGACGACAGCGATGATAGCGA
CGAAGAGGCGAATGGTGAAGTGTCCCTGTCGGAGGTGTACAATGACGATT
TGGAAGAGGATAACTCTGATTGGGAAGGCGAAGACGAGGCTGGCGAGGAG
GACGAGGAAGAGGATTCCGATATTGATGATGCCGATGGTGATGCAAACGA
ATCGGCTGCATCAGTGAATGCCAAGGACAAGGATGGCGAAAAGGAAGCAG
ACGAGTCGCAAGTCAGAGGCAAGAAGAGAAAGCATGATGGTGCAAGCTTT
CTAGACCAT
FMO12830.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:21:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mapmodulin-RA | 2073 | CG5784-RA | 397..1179 | 9..791 | 3915 | 100 | Plus |
| Mapmodulin-RB | 2145 | CG5784-RB | 328..1110 | 9..791 | 3915 | 100 | Plus |
| Mapmodulin-RD | 2379 | CG5784-RD | 397..904 | 9..516 | 2540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:21:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17868432..17868810 | 433..55 | 1895 | 100 | Minus |
| 2R | 25286936 | 2R | 17867326..17867561 | 750..515 | 1180 | 100 | Minus |
| 2R | 25286936 | 2R | 17868287..17868370 | 516..433 | 420 | 100 | Minus |
| 2R | 25286936 | 2R | 17871329..17871376 | 56..9 | 240 | 100 | Minus |
| 2R | 25286936 | 2R | 17867213..17867256 | 791..748 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:21:21 has no hits.
FMO12830.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:49 Download gff for
FMO12830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mapmodulin-RB | 318..1108 | 1..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:47 Download gff for
FMO12830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mapmodulin-RB | 323..1113 | 1..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:35 Download gff for
FMO12830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mapmodulin-RB | 323..1113 | 1..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:35 Download gff for
FMO12830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17867209..17867253 | 751..795 | 95 | <- | Minus |
| 2R | 17867326..17867559 | 517..750 | 100 | <- | Minus |
| 2R | 17868287..17868369 | 434..516 | 100 | <- | Minus |
| 2R | 17868432..17868808 | 57..433 | 100 | <- | Minus |
| 2R | 17871329..17871381 | 1..56 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:47 Download gff for
FMO12830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13754714..13754758 | 751..795 | 95 | <- | Minus |
| arm_2R | 13754831..13755064 | 517..750 | 100 | <- | Minus |
| arm_2R | 13755792..13755874 | 434..516 | 100 | <- | Minus |
| arm_2R | 13755937..13756313 | 57..433 | 100 | <- | Minus |
| arm_2R | 13758834..13758886 | 1..56 | 92 | | Minus |
