FMO12831.5prime Sequence
1092 bp (990 high quality bases) assembled on 2013-01-29
> FMO12831.5prime
CAGTCGACATGTCGGAGGACCAAGGCAAAGACTACACACTGGAGTCCGAC
TCCGAGCTGCGCTTTGAAATCGAGCAGAAGGATGCCAAAGTGCTGGTGTC
CCTGGTCAGTGGATTTGCGGAGCTGTTCGGCACGGAGCTGGTGAAGAAAA
AGCAGTACGAGTTCGGCGTGGGCGCCAAGGTGGCCATCTTCACGTACCAG
GGCTGTGTACTCCACGTCTCCGGCAAAATGGACGTGTGCTACATCTCCAA
GGAGACGCCAATGGTGCAGTACGTCAACTGTCATGCGGCACTGGAGCAGT
TCCGCATGGAGGCCGAGGAGAAGGATCGCTACGGACCAGTGGCCATGGTC
GTCGGTCCCATGGACGTGGGCAAGAGCACTCTGTGCCGCATCCTGCTTAA
CTATGCTGTGCGCGTGGGTCGTCGACCGCTGTACGCCGACCTGGATGTTG
GACAGGGCTCGATTGCCATTTCCGGGAGTGTGGCCACCATTCTCATCGAG
CGACCGGCGAACGTTGAGGAGGGATTCGCCAAGACAGCGCCGCTGGTCTA
TCACTTTGGCCATAAGTCTCCCAGCGGAAACAGCGTGCTGTACAATGCCG
TGGTTTCCAAAATGGCAGAGGTAACACTGCAATCTCTGAATAGCAACAAG
CGAACAAAAAGCTCTGGCATTATTATAAACACTTGTGGCTGGGTAAAGGG
ATCCGGCTACGCGCACCTGTTGCACGCGGCCAAAGCCTATGGAGCCTGTG
CCATCTTTGTTCTGGACCAGGAGCGACTATACAACGAGCTGCTTCGAGAT
GTTCCCAAGGGAGTTCATGTGGTACTGCTGCCCAAGAGCGGCGGCGTCGT
CGAGCGCAGCAGGGAACTGCGACACGAGGCGAGGGATCAGCGCATCAAGG
AGTACTTCTACGGCATACAGGCGCCCTTCTATCCGTTCAGCTTCAAGGTG
AAGTTCCAGACTTGCGACCTCTACAAGATCGGCGCACCGCCGCTGCCCGA
CTCTGCATGCCAATTGGAATGAAGGCGGAAGACACACAGACAGGTGTGGG
ACGTTAACCCTCACGCCCGCCTAATTCTATCATGGGCCTGGT
FMO12831.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:21:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cbc-RA | 1654 | CG5970-RA | 107..1137 | 8..1034 | 4960 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:21:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13484571..13485123 | 654..102 | 2765 | 100 | Minus |
| 2R | 25286936 | 2R | 13484097..13484480 | 1034..655 | 1600 | 97.4 | Minus |
| 2R | 25286936 | 2R | 13485192..13485285 | 101..8 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:21:27 has no hits.
FMO12831.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:50 Download gff for
FMO12831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbc-RA | 108..1156 | 1..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:50 Download gff for
FMO12831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbc-RA | 103..1151 | 1..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:39 Download gff for
FMO12831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbc-RA | 103..1151 | 1..1046 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:39 Download gff for
FMO12831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13484083..13484480 | 655..1046 | 96 | <- | Minus |
| 2R | 13484571..13485123 | 102..654 | 100 | <- | Minus |
| 2R | 13485192..13485289 | 1..101 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:50 Download gff for
FMO12831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9371588..9371985 | 655..1046 | 96 | <- | Minus |
| arm_2R | 9372076..9372628 | 102..654 | 100 | <- | Minus |
| arm_2R | 9372697..9372794 | 1..101 | 97 | | Minus |
