FMO12832.5prime Sequence
1124 bp (988 high quality bases) assembled on 2013-01-29
> FMO12832.5prime
CAGTCGACATGAAAGGCAATCATTATAAAATGTCTCGTAACAAAGACAAA
TACGACAGCGCCAATCGGCGGCAGCAGATCTTTCTGTCGCAGGAGGACAT
AGCTGCGGGCAAGAAGACGAACTGGAGTGGCCTAGAGATTACTGGCTGCG
TCCGCAATATCAGCCCGTCGCTGTGGGAATTTGAGCATCTAACCGCCCTC
TACCTGAACGACAACCAGCTGCTGCGATTGCCCGCAGACGTTGGCATGCT
GACCAGCCTCCGAACTTTGGACCTGTCCAGCAATAAGCTAAGAAGTCTTC
CCGCAGAGCTCGGCGAGCTCATCCAGTTGCGGGAGCTGTTGCTGAACAAC
AACTTTCTGCGCGTACTGCCTTACGAGATCGGCAAGCTGTTCCACCTCGT
CATACTCGGCCTCATGGGCAATCCGCTGCAAAAGGAGTTCATGAACATCT
ACAACGAACCGAACGGCACGCAGAAACTGCTCACCTACATGCTGGACAAC
TTGTCATTTACCGTGAATCCACCGCCCCAGAGGCCCTGGCTGCCACTGGC
CAAGCCCAACAAAACGCGACCAGCCTGCATTTTTACGGTCATGTGCTATA
ATGTGCTCTGCGACAAGTACGCGACGCGACAAATGTACGGATACTGTCCG
TCGTGGGCGCTATGCTGGGAGTACCGAAAAAAGTCGATTATCGACGAGAT
ACGGCACTATGCAGCGGACATTATCAGTCTGCAGGAGATCGAAACGGAGC
AATTCTATCACTTCTTCCTGCCGGACTCAAGACGATGGGTACGAGGGAAT
CTTCTCACCGAAGTCGCGTGCTAAGACTATGTCCGAGCTGGAGAGGAAGT
ACGTCGATGGCTGTGCGATATTCTTCAGGCCGTCCAAGTTTACGCTGATC
AAGGAATCATTGATCGAGTTCAATCAGCTGGCAATGGCAATGCCGAGGGC
TCCGACACATGCTGAACGCGTATGACTAGGATAACATCGGCTGTCGCACT
GCTCAAGGTGAGGAAACGCATGGGAGCGATGTCCGAGGTGACCATCTCGC
AGCGCTGTCTCGTCTGCCCGGGCCATACCTGGACCTGAATTCTGCGCACG
TCAGCCTATCCAGACATGAATGCT
FMO12832.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:21:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twin-RF | 2690 | CG31137-RF | 187..1313 | 9..1115 | 4950 | 97.3 | Plus |
| twin-RC | 2586 | CG31137-RC | 83..1209 | 9..1115 | 4950 | 97.3 | Plus |
| twin-RE | 3548 | CG31137-RE | 347..1473 | 9..1115 | 4950 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:21:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24199273..24199587 | 889..577 | 1460 | 99 | Minus |
| 3R | 32079331 | 3R | 24219964..24220157 | 332..139 | 955 | 99.5 | Minus |
| 3R | 32079331 | 3R | 24219600..24219776 | 507..331 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 24220214..24220345 | 145..14 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 24199882..24199951 | 577..508 | 350 | 100 | Minus |
| 3R | 32079331 | 3R | 24199132..24199213 | 967..888 | 310 | 97.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:21:33 has no hits.
FMO12832.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:51 Download gff for
FMO12832.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RE | 341..1420 | 3..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:54 Download gff for
FMO12832.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RE | 341..1420 | 3..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:42 Download gff for
FMO12832.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RE | 341..1420 | 3..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:42 Download gff for
FMO12832.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24199021..24199213 | 888..1067 | 91 | <- | Minus |
| 3R | 24199275..24199587 | 577..887 | 99 | <- | Minus |
| 3R | 24199883..24199951 | 508..576 | 100 | <- | Minus |
| 3R | 24219600..24219775 | 332..507 | 100 | <- | Minus |
| 3R | 24219965..24220151 | 145..331 | 100 | <- | Minus |
| 3R | 24220215..24220352 | 7..144 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:54 Download gff for
FMO12832.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20024743..20024935 | 888..1067 | 91 | <- | Minus |
| arm_3R | 20024997..20025309 | 577..887 | 99 | <- | Minus |
| arm_3R | 20025605..20025673 | 508..576 | 100 | <- | Minus |
| arm_3R | 20045322..20045497 | 332..507 | 100 | <- | Minus |
| arm_3R | 20045687..20045873 | 145..331 | 100 | <- | Minus |
| arm_3R | 20045937..20046074 | 7..144 | 97 | | Minus |
