Clone FMO12834 Report

Search the DGRC for FMO12834

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:128
Well:34
Vector:pMK33-CFH-BD
Associated Gene/TranscriptTaf6-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12834.5prime Sequence

1115 bp (1018 high quality bases) assembled on 2013-01-29

> FMO12834.5prime
CAGTCGACATGAGTGGAAAACCGTCGAAACCGAGCAGCCCCTCCAGCAGC
ATGCTGTACGGCTCCAGCATCTCGGCGGAGTCCATGAAGGTGATCGCGGA
GAGCATCGGAGTGGGCTCCCTGTCGGATGACGCCGCCAAGGAACTAGCGG
AGGATGTGTCCATCAAGCTGAAGAGGATTGTACAGGATGCGGCCAAGTTC
ATGAACCACGCCAAGCGGCAGAAGCTCTCAGTGCGGGACATCGACATGTC
CCTTAAGGTGCGAAATGTGGAGCCGCAGTACGGTTTCGTAGCCAAGGACT
TCATTCCATTCCGCTTCGCATCTGGCGGAGGACGGGAGCTGCACTTCACC
GAGGACAAGGAAATCGACCTAGGAGAAATCACATCCACCAACTCTGTAAA
AATTCCCCTGGATCTCACCCTGCGCTCCCATTGGTTTGTTGTGGAGGGAG
TGCAACCCACTGTGCCCGAAAACCCCCCTCCGCTCTCGAAGGATTCCCAG
TTACTGGACTCGGTCAATCCAGTTATTAAGATGGATCAAGGCCTAAACAA
AGATGCGGCAGGCAAACCCACCACCGGCAAGATACACAAGCTGAAAAACG
TGGAGACCATTCATGTCAAGCAACTGGCCACGCACGAGTTGTCCGTGGAG
CAGCAGTTGTACTACAAGGAGATCACCGAGGCGTGCGTGGGATCTGATGA
GCCGCGGCGCGGGGAAGCGCTGCAGTCGCTGGGATCCGATCCTGGCCTGC
ACGAAATGCTTCCCCGCATGTGCACCTTCATTGCCGAGGGAGTTAAGGTC
AATGTGGTTCAGAACAACTTGGCGTTGCTTATTTACCTCATGCGCATGGT
TCGTGCGCTTCTGGATAATCCTTCGCTGTTTCTGGAGAATACCTCCACGA
ACTGATACCCTCGGTGATGACGTGCATTGTGTCCAAACAGCTGTGTTTGC
GCCCGAGCTGGACATCACTGGGCCCTGCAGACTTTGCCTCCCGACTGATG
CTCAATCTTGCAGACTTCAATACCCTAGCAAACATCTGCACCGTGTACCC
GCATCTTTCAGCCAGGCCTTGCGACGACAGACCACTGTTCTCCGCTTTAC
GTCTAATGCGTCTCT

FMO12834.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
Taf6-RB 2053 CG32211-RB 73..1180 9..1101 4960 97.6 Plus
Taf6-RA 2056 CG32211-RA 73..1180 9..1101 4960 97.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19599160..19600040 9..889 4405 100 Plus
3L 28110227 3L 19600103..19600217 889..1000 395 95.7 Plus
Blast to na_te.dros performed 2014-11-28 18:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
rover 7318 rover ROVER 7318bp 1457..1499 166..124 116 74.4 Minus

FMO12834.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:44 Download gff for FMO12834.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 67..1113 1..1040 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:17 Download gff for FMO12834.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 66..1112 1..1040 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:10 Download gff for FMO12834.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf6-RA 66..1112 1..1040 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:10 Download gff for FMO12834.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19599153..19600044 1..892 99 -> Plus
3L 19600107..19600254 893..1034 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:17 Download gff for FMO12834.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19592253..19593144 1..892 99 -> Plus
arm_3L 19593207..19593354 893..1034 92   Plus