FMO12835.5prime Sequence
1143 bp (1010 high quality bases) assembled on 2013-01-29
> FMO12835.5prime
CAGTCGACATGTCCGAGAAGCACGGCCAGCTGGGTGCGCAGTGGACGAAA
TCAGCGGCGCCAGCAGCAACAACAGCACCAGTCTCCAATTCCATTCCCAT
ACCTCAACCGATCCCTGTGGCACTACCCCTCCAGAAACCCAACGCCAATC
CCTATGGGAACTGCAGCCTACAGCCCGCGGATATAGTCTACAGCGCAACC
AGATTTCAAGGACCTGCTATCCATGCAAAGGGCTCTCCTTTGACCATTAC
GCCCGTGGGCCCTGTCGGCGGAGCACCTGCCTCTGCCCAGATCTCGCCCA
CGAGTCACACCCATGTACCTGTACCTGTAGCCACGCCCAGCGGCTTTGTG
CCGCCTCCGTTTTCCAATGCCACCAGCGCCAGTGGAGGTGTCTCCACTTC
CGTACTTACTCCGAATCCCTTTGCCACGGCGAGTGCAAATGCTGCTGGCC
TGGCCTTTGCCAATGCCTTCAGCTTTAGCACAGCCCAGCAACTGGGTCTG
GGCAAGATCATGCACGCTATGGGCGGAGCTACTGCGGGAGTGCCATCGGC
GCCAGTACCAGTCACCACGACTCCAGCGACAGCTGCTCCTTCGACCCCAA
CAATAGCTGGTCCACGGCATCCGAACGAGGGCGTTCCAGCGGCCAGTGGA
GTGATAAACTCCACCATTGCTGAAAACGTAATGAATGCTTTGAGCAACTC
CAACTCAGCGGGATCAGTTCCCAGTGAGGAGAAGATGAGAAGGGTGCTGC
AGGTGATTGAGACCAGCTTGGACGACAATGCGAAGCTGCAGATTTCACAG
ATTCTAGAGCGTGTCTCGGGACTAAAGCCCATTGAGAAGCTATTCCTCTA
TCTTCGTTTGCCTGGCGAATGCGCAGACACCGATCCGTTGAGGCAGCCAC
AAAATCTACTAGGAACGCGCTCGGAGATTAACCATACCATTATTGGGTGC
GTTCCCATCTGGAGCACGATGCACAGGTCTCATACCAAAACAGGATGTGG
ACCATGAATTACTTAGCTTATTGGCGAACGCCCTCAACATCAACCTCTGT
CCACAGCAAACTTCGGCAAGGGGATGGAACAGGTATTTCCGGGCGTTCGT
TCCTCGGAAATTAGAGAGCGTGAAACTCTCTGCGTCTATTGTT
FMO12835.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:20:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9727-RC | 6313 | CG9727-RC | 564..1688 | 7..1130 | 5255 | 98.2 | Plus |
| CG9727-RB | 4591 | CG9727-RB | 451..1575 | 7..1130 | 5255 | 98.2 | Plus |
| CG9727-RA | 4591 | CG9727-RA | 451..1575 | 7..1130 | 5255 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:20:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6455258..6456023 | 772..7 | 3830 | 100 | Minus |
| 3R | 32079331 | 3R | 6454958..6455194 | 1007..773 | 1040 | 97.9 | Minus |
| 3R | 32079331 | 3R | 6454642..6454713 | 1114..1042 | 240 | 91.8 | Minus |
Blast to na_te.dros performed 2014-11-28 18:20:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1523..1559 | 45..81 | 122 | 81.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2378 | 45..81 | 113 | 78.4 | Plus |
FMO12835.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:45 Download gff for
FMO12835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9727-RA | 415..1547 | 1..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:21 Download gff for
FMO12835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9727-RA | 445..1577 | 1..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:13 Download gff for
FMO12835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9727-RA | 445..1577 | 1..1133 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:13 Download gff for
FMO12835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6454952..6455194 | 773..1014 | 97 | <- | Minus |
| 3R | 6455258..6456026 | 1..772 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:21 Download gff for
FMO12835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2280674..2280916 | 773..1014 | 97 | <- | Minus |
| arm_3R | 2280980..2281748 | 1..772 | 99 | | Minus |
