FMO12836.5prime Sequence
983 bp (983 high quality bases) assembled on 2013-01-29
> FMO12836.5prime
CAGTCGACATGGCCGAGAACAAGCAAGTGGATACAGAAATAAACGGCGAG
GATTTCACCAAGGACGTGACTGCCGACGGTCCGGGATCTGAAAATGGTGA
TGCGGGCGCCGCCGGCTCGACCAACGGCAGTTCGGACAACCAATCGGCCG
CATCCGGCCAGCGGGACGACGACAGGAAACTGTTTGTCGGTGGTCTGAGC
TGGGAAACGACTGAGAAGGAACTCCGCGATCACTTCGGCAAATATGGCGA
GATCGAGAGCATCAATGTCAAGACAGATCCCCAGACCGGTCGGTCCCGAG
GATTCGCCTTCATCGTGTTTACAAACACCGAGGCCATTGACAAAGTCAGC
GCCGCGGATGAGCACATAATCAACAGCAAGAAGGTCGATCCCAAGAAGGC
CAAGGCCAGGCACGGCAAGATCTTTGTCGGCGGCCTCACCACAGAGATCA
GCGATGAGGAGATTAAGACCTACTTTGGACAGTTCGGCAATATCGTCGAG
GTGGAGATGCCATTCGACAAGCAAAAGTCGCAGCGCAAAGGATTCTGCTT
CATCACCTTCGATTCGGAGCAGGTGGTGACAGATTTGCTGAAGACGCCCA
AGCAGAAGATCGCCGGCAAGGAGGTCGATGTTAAGCGTGCGACGCCCAAG
CCGGAGAACCAGATGATGGGCGGTATGCGTGGTGGACCACGCGGTGGTAT
GCGCGGCGGACGCGGTGGCTACGGAGGACGAGGTGGCTACAACAACCAGT
GGGACGGACAGGGATCATACGGCGGCTATGGCGGCGGCTACGGCGGATAT
GGTGCCGGTGGTTATGGCGACTACTATGCCGGCGGCTACTATAATGATAT
GACTACGGTTATGGTAAATACAACAAACAACAAAGTAGTGCTCAAACAAT
TATTACATAACACACGTCGAGTATTACCATCAAAACAAGAACCATAGCAA
CACTATCAGCAGTCGCAAGCTTTCTAAGACCAT
FMO12836.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sqd-RA | 5551 | CG16901-RA | 115..1075 | 9..963 | 4640 | 99.3 | Plus |
| sqd-RC | 2239 | CG16901-RC | 111..967 | 9..864 | 4260 | 99.9 | Plus |
| sqd-RE | 2844 | CG16901-RE | 386..1242 | 9..864 | 4260 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:20:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13642829..13643103 | 491..217 | 1375 | 100 | Minus |
| 3R | 32079331 | 3R | 13642511..13642755 | 736..492 | 1225 | 100 | Minus |
| 3R | 32079331 | 3R | 13642194..13642428 | 963..735 | 860 | 97 | Minus |
| 3R | 32079331 | 3R | 13645752..13645919 | 176..9 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 13643169..13643212 | 216..173 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:20:48 has no hits.
FMO12836.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:45 Download gff for
FMO12836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqd-RA | 378..1352 | 1..969 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:25 Download gff for
FMO12836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqd-RA | 107..1081 | 1..969 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:17 Download gff for
FMO12836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sqd-RA | 107..1081 | 1..969 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:17 Download gff for
FMO12836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13642188..13642427 | 736..969 | 95 | <- | Minus |
| 3R | 13642512..13642755 | 492..735 | 100 | <- | Minus |
| 3R | 13642829..13643103 | 217..491 | 100 | <- | Minus |
| 3R | 13643169..13643209 | 176..216 | 100 | <- | Minus |
| 3R | 13645753..13645925 | 1..175 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:25 Download gff for
FMO12836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9467910..9468149 | 736..969 | 95 | <- | Minus |
| arm_3R | 9468234..9468477 | 492..735 | 100 | <- | Minus |
| arm_3R | 9468551..9468825 | 217..491 | 100 | <- | Minus |
| arm_3R | 9468891..9468931 | 176..216 | 100 | <- | Minus |
| arm_3R | 9471475..9471647 | 1..175 | 97 | | Minus |
