FMO12838.5prime Sequence
836 bp (835 high quality bases) assembled on 2013-01-29
> FMO12838.5prime
CAGTCGACATGAATTTACCACCAAACCCTGTAATTGCTCGTGGACGTGGT
CGAGGAAGAAAGCCCAATAATGTAGAGGCCAATCGCGGCTTCGCTCCTTC
GCTGGGTCAGAAGTCGGACCCTTCCCACTCGGAAGGAAATCAAGCATCCG
GAGGCAATGGTGGTGGTGGTGATGCTCAAGTGGGTCCCTCGATAGAGAAA
TCCAGTTTGAGCGCGGTGCAAATGCACAAGTCCGAGGGCGATCCGCGTGG
CTCCGTGCGCGGCCGTAGGCTAATAACGGATTTGGTGTATTCACGTCCTC
CAGGGATGACCAGCAAGAAAGGAGTGGTTGGCACTCATATTACCGTGCAG
GCAAACTATTTTAAGGTATTAAAGCGTCCAAACTGGACCATCTACCAGTA
CCGCGTCGATTTTACGCCTGATGTGGAGGCTACACGACTGCGACGGTCTT
TCTTGTATGAACATAAAGGGATCCTGGGCGGCTACATCTTTGACGGAACC
AATATGTTTTGCATCAATCAGTTCAAAGCTGTTCAAGATAGCCCCTATGT
TTTGGAACTGGTTACGAAGAGTCGTGCTGGCGAAAACATTGAAATTAAGA
TCAAGGCTGTTGGATCTGTGCAATCTACGGATGCCGAGCAGTTTCAGGTC
CTTAATCTCATACTGCGCAGGGCCATGGAGGGCTTAGACTTGAAGCTGGT
CTCGCGCTACTACTACGATCCTCAAGCTAAGATTATTTGGAGAATTTCCG
CATGCAATTATGGCCTGCTATCAGACTTCGATTCGCCAGCACGAAAATGA
TATATACTTTGTTCCGAGATATGCCACAAGGTTATG
FMO12838.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:21:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aub-RA | 2825 | CG6137-RA | 112..942 | 9..836 | 4080 | 99.6 | Plus |
aub-RC | 2808 | CG6137-RC | 184..925 | 98..836 | 3620 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:21:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11000165..11000659 | 731..237 | 2475 | 100 | Minus |
2L | 23513712 | 2L | 11000785..11000925 | 238..98 | 690 | 99.3 | Minus |
2L | 23513712 | 2L | 11001269..11001365 | 105..9 | 485 | 100 | Minus |
2L | 23513712 | 2L | 10999999..11000102 | 836..735 | 420 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:21:58 has no hits.
FMO12838.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:54 Download gff for
FMO12838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aub-RA | 119..955 | 3..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:12 Download gff for
FMO12838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aub-RA | 106..942 | 3..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:58 Download gff for
FMO12838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aub-RA | 106..942 | 3..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:58 Download gff for
FMO12838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10999999..11000106 | 732..836 | 97 | <- | Minus |
2L | 11000165..11000658 | 238..731 | 100 | <- | Minus |
2L | 11000786..11000918 | 105..237 | 100 | <- | Minus |
2L | 11001270..11001371 | 3..104 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:12 Download gff for
FMO12838.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10999999..11000106 | 732..836 | 97 | <- | Minus |
arm_2L | 11000165..11000658 | 238..731 | 100 | <- | Minus |
arm_2L | 11000786..11000918 | 105..237 | 100 | <- | Minus |
arm_2L | 11001270..11001371 | 3..104 | 96 | | Minus |