Clone FMO12838 Report

Search the DGRC for FMO12838

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:128
Well:38
Vector:pMK33-CFH-BD
Associated Gene/Transcriptaub-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12838.5prime Sequence

836 bp (835 high quality bases) assembled on 2013-01-29

> FMO12838.5prime
CAGTCGACATGAATTTACCACCAAACCCTGTAATTGCTCGTGGACGTGGT
CGAGGAAGAAAGCCCAATAATGTAGAGGCCAATCGCGGCTTCGCTCCTTC
GCTGGGTCAGAAGTCGGACCCTTCCCACTCGGAAGGAAATCAAGCATCCG
GAGGCAATGGTGGTGGTGGTGATGCTCAAGTGGGTCCCTCGATAGAGAAA
TCCAGTTTGAGCGCGGTGCAAATGCACAAGTCCGAGGGCGATCCGCGTGG
CTCCGTGCGCGGCCGTAGGCTAATAACGGATTTGGTGTATTCACGTCCTC
CAGGGATGACCAGCAAGAAAGGAGTGGTTGGCACTCATATTACCGTGCAG
GCAAACTATTTTAAGGTATTAAAGCGTCCAAACTGGACCATCTACCAGTA
CCGCGTCGATTTTACGCCTGATGTGGAGGCTACACGACTGCGACGGTCTT
TCTTGTATGAACATAAAGGGATCCTGGGCGGCTACATCTTTGACGGAACC
AATATGTTTTGCATCAATCAGTTCAAAGCTGTTCAAGATAGCCCCTATGT
TTTGGAACTGGTTACGAAGAGTCGTGCTGGCGAAAACATTGAAATTAAGA
TCAAGGCTGTTGGATCTGTGCAATCTACGGATGCCGAGCAGTTTCAGGTC
CTTAATCTCATACTGCGCAGGGCCATGGAGGGCTTAGACTTGAAGCTGGT
CTCGCGCTACTACTACGATCCTCAAGCTAAGATTATTTGGAGAATTTCCG
CATGCAATTATGGCCTGCTATCAGACTTCGATTCGCCAGCACGAAAATGA
TATATACTTTGTTCCGAGATATGCCACAAGGTTATG

FMO12838.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
aub-RA 2825 CG6137-RA 112..942 9..836 4080 99.6 Plus
aub-RC 2808 CG6137-RC 184..925 98..836 3620 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11000165..11000659 731..237 2475 100 Minus
2L 23513712 2L 11000785..11000925 238..98 690 99.3 Minus
2L 23513712 2L 11001269..11001365 105..9 485 100 Minus
2L 23513712 2L 10999999..11000102 836..735 420 98.1 Minus
Blast to na_te.dros performed on 2014-11-28 18:21:58 has no hits.

FMO12838.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:54 Download gff for FMO12838.5prime
Subject Subject Range Query Range Percent Splice Strand
aub-RA 119..955 3..836 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:12 Download gff for FMO12838.5prime
Subject Subject Range Query Range Percent Splice Strand
aub-RA 106..942 3..836 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:58 Download gff for FMO12838.5prime
Subject Subject Range Query Range Percent Splice Strand
aub-RA 106..942 3..836 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:58 Download gff for FMO12838.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10999999..11000106 732..836 97 <- Minus
2L 11000165..11000658 238..731 100 <- Minus
2L 11000786..11000918 105..237 100 <- Minus
2L 11001270..11001371 3..104 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:12 Download gff for FMO12838.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10999999..11000106 732..836 97 <- Minus
arm_2L 11000165..11000658 238..731 100 <- Minus
arm_2L 11000786..11000918 105..237 100 <- Minus
arm_2L 11001270..11001371 3..104 96   Minus