FMO12839.5prime Sequence
1026 bp (1007 high quality bases) assembled on 2013-01-29
> FMO12839.5prime
CAGTCGACATGCCAGCCAAACCAGTGAATCCCGATCTCCAGAAGGAACGC
AGCACGGCCACCTTCAATCCCCGGGAGTTCTCCGTTCTGTGGGCCGGCGG
CGAGGAGCGATTCAAGGAGAAGAAGGCCCTGGAGAAATTGTTTTTGGAGG
ATCCAGCCCTTCAGGACGACTTGCCCATTTCCTATTTGTCACACAAGGAG
CTCTATGAGCACAGCTTGCGCAAAGCCTGCATCATAGGAGAGAAGATCCG
CAAGCTACGTGCTGATGGCGAGGATGGAGTGGATACTTACAATGCTCTGC
TTGGTGGATCCTTGGGATCGGCTATTCTAAAGGAGGGCAATCCGCTTGCG
CTGCACTACGTGATGTTCGTGCCCACCATCATGGGCCAGGGAACGATGGA
TCAGCAGGTGGAATGGCTGAGCAAGGCCTGGGACTGTGAAATCATTGGCA
CCTATGCCCAAACGGAACTGGGACACGGAACCTTCCTGCGCGGTCTGGAG
ACCAGGGCTGACTACGATGCCAGCACCCAGGAGTTTGTTATAAACACTCC
ATCACTCAGTGCATACAAGTGGTGGCCCGGTGGATTGGGACACACTGCTA
ACCATGCGGTTGTGGTGGCACAACTCTACACCAAGGGCGAGTTCCGTGGT
CTGGCTCCTTTTATTGTCCAATTGAGGGATTCCGATACTCACCGTCCCAT
GCCCGGCATCGACATTGGAGATATTGGTACCAAGCTGGGCATGAAGGGTG
TCAACAATGGCTATTTGGGACTGAAGAACGTACGGGTGCCTTTAAACAAC
ATGCTGATGAAGAACCAGCAAGTGCTGCCCGATGGCACATATGTGGCGCC
GAAGAATAGCGTGCTTACCTACGGAATATGATGTTTGTGCGTTGTGCTCT
TATCCGTGATACCGCTCAGAGCCTGGCAAAGGCTTCACTATTGCACTAGG
TATTCGCTGTTCGCCGACGAGTCCATTGATCCCATCAACCGGAGCCCCAA
TCATGGACCTTACACGCAGCGGTGAG
FMO12839.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:22:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5009-RA | 2506 | CG5009-RA | 327..1347 | 9..1020 | 4850 | 98.9 | Plus |
| CG4586-RA | 2240 | CG4586-RA | 554..691 | 447..584 | 255 | 79 | Plus |
| Acox57D-p-RB | 2235 | CG9707-RB | 516..568 | 447..499 | 205 | 92.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:22:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17762336..17762635 | 286..585 | 1470 | 99.3 | Plus |
| 2R | 25286936 | 2R | 17762693..17762983 | 586..876 | 1455 | 100 | Plus |
| 2R | 25286936 | 2R | 17762128..17762288 | 132..292 | 805 | 100 | Plus |
| 2R | 25286936 | 2R | 17761266..17761389 | 9..132 | 620 | 100 | Plus |
| 2R | 25286936 | 2R | 17763047..17763187 | 880..1013 | 325 | 93.6 | Plus |
| X | 23542271 | X | 6970471..6970608 | 447..584 | 255 | 79 | Plus |
| 2R | 25286936 | 2R | 21387296..21387348 | 447..499 | 205 | 92.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:22:03 has no hits.
FMO12839.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:55 Download gff for
FMO12839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5009-RA | 327..1357 | 1..1023 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:16 Download gff for
FMO12839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5009-RA | 320..1350 | 1..1023 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:01 Download gff for
FMO12839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5009-RA | 320..1350 | 1..1023 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:01 Download gff for
FMO12839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17762343..17762635 | 293..585 | 100 | -> | Plus |
| 2R | 17761259..17761389 | 1..132 | 96 | -> | Plus |
| 2R | 17762129..17762288 | 133..292 | 100 | -> | Plus |
| 2R | 17762693..17762988 | 586..880 | 99 | -> | Plus |
| 2R | 17763048..17763198 | 881..1023 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:16 Download gff for
FMO12839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13648764..13648894 | 1..132 | 96 | -> | Plus |
| arm_2R | 13649634..13649793 | 133..292 | 100 | -> | Plus |
| arm_2R | 13649848..13650140 | 293..585 | 100 | -> | Plus |
| arm_2R | 13650198..13650493 | 586..880 | 99 | -> | Plus |
| arm_2R | 13650553..13650703 | 881..1023 | 92 | | Plus |
