FMO12843.5prime Sequence
1073 bp (986 high quality bases) assembled on 2013-01-29
> FMO12843.5prime
CAGTCGACATGGCGATCGGTTCCGTAGTTTTTGCCGCCGCAGGCTTGCTG
CTCCTCCTCCTCCCGCCGTCGCATCAGCAAGCGACAGCGGGAAACATTGG
ATCCCAGTGGCGCGACGATGAGGTCCATTTCAACCGCACCCTGGACTCCA
TTTTGGTGCCACGCGTCGTTGGCAGTCGGGGACATCAGCAGGTGCGCGAG
TACCTGGTCCAATCGCTGAACGGCCTTGGCTTCCAAACGGAAGTGGATGA
GTTCAAGCAGAGAGTTCCAGTTTTCGGCGAACTCACGTTTGCCAACGTAG
TGGGCACAATCAATCCCCAGGCTCAGAACTTTCTCGCTCTGGCCTGCCAC
TACGACAGCAAGTACTTCCCCAATGATCCCGGCTTTGTGGGCGCCACTGA
CTCCGCCGTGCCCTGTGCCATTCTGTTGAACACCGCCAAGACCTTGGGCG
CGTATCTGCAGAAAGAGTTTCGCAATCGCAGCGATGTGGGACTTATGCTC
ATATTCTTCGATGGCGAGGAGGCCTTTAAGGAGTGGACCGATGCGGACTC
TGTATACGGATCAAAGCATCTGGCCGCGAAGTTGGCTAGCAAACGCAGTG
GTTCCCAGGCGCAACTAGCTCCACGCAATATAGATCGAATTGAAGTTCTG
GTGCTGCTGGATCTAATTGGGGCGCGGAATCCCAAGTTCTCCAGTTTTTA
TGAAAACACCGACGGACTGCACTCCAGTCTCGTGCAGATTGAGAAATCTC
TGCGCACTGCCGGCCAGCTGGAGGGCAATAACAATATGTTTTTAAGTCGT
GTCAGCGGTGGTCTAGTCGACGATGATCATCGACCGTTTTTAGATGAGAA
TGTTCCTGTGCTGCATTTGGTAGCCACTCCTTTCCCAGACGTCTGGCACA
CGCCTCGGGACAATGCCGTCAATCTGCCCTGCTTCATACGCAATTTCAAC
GTGTTTTCCGTAATTACGTTTATCAATACCTTAGCGGCACACGTCATCAA
GTGAATTTGCGTTTTTACGAACAGCAAGCCTTCTAGAACCATTCGTTTGG
CGGCGGCGTAGTGAGTGGTAATA
FMO12843.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:22:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
QC-RA | 1141 | CG32412-RA | 36..1055 | 9..1023 | 4880 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:22:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5901796..5902104 | 497..189 | 1545 | 100 | Minus |
3L | 28110227 | 3L | 5901153..5901360 | 849..642 | 1040 | 100 | Minus |
3L | 28110227 | 3L | 5901416..5901561 | 642..497 | 730 | 100 | Minus |
3L | 28110227 | 3L | 5900927..5901099 | 1018..850 | 550 | 93.1 | Minus |
3L | 28110227 | 3L | 5902157..5902255 | 194..96 | 495 | 100 | Minus |
3L | 28110227 | 3L | 5902335..5902421 | 95..9 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:22:20 has no hits.
FMO12843.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:57 Download gff for
FMO12843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32412-RA | 23..1049 | 1..1023 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:28 Download gff for
FMO12843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
QC-RA | 29..1055 | 1..1023 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:11 Download gff for
FMO12843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
QC-RA | 29..1055 | 1..1023 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:11 Download gff for
FMO12843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5901153..5901360 | 642..849 | 100 | <- | Minus |
3L | 5901417..5901560 | 498..641 | 100 | <- | Minus |
3L | 5900927..5901099 | 850..1018 | 94 | <- | Minus |
3L | 5901796..5902101 | 192..497 | 100 | <- | Minus |
3L | 5902160..5902255 | 96..191 | 100 | <- | Minus |
3L | 5902335..5902428 | 1..95 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:28 Download gff for
FMO12843.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5895435..5895528 | 1..95 | 95 | | Minus |
arm_3L | 5894027..5894199 | 850..1018 | 94 | <- | Minus |
arm_3L | 5894253..5894460 | 642..849 | 100 | <- | Minus |
arm_3L | 5894517..5894660 | 498..641 | 100 | <- | Minus |
arm_3L | 5894896..5895201 | 192..497 | 100 | <- | Minus |
arm_3L | 5895260..5895355 | 96..191 | 100 | <- | Minus |