FMO12844.5prime Sequence
467 bp (467 high quality bases) assembled on 2013-01-29
> FMO12844.5prime
CAGTCGACATGGTGTCGAGTGTAAAAATGATCTTGGCTCTCACCGTCTTG
GCCACCGTAGCCTGCACTGGCTACGCCATCAAGTGCTATCAGTGCGATTC
CTTGACTAATTCCGAGTGTGGAAAGGACATCAAGTCAGACAGTAGCCTCG
TTTTGGATTGCACCAAGATGGCTCCACCTCGATTCCTCCAGAACTTCTTC
CCGGTTCGCAACGCCACCGGTTGCATGAAGCAGACCATCGACATTCCCGG
TAACCCGCAAATCGTGAGGTCCTGCTACTTTGGCAACATCGCCGACACGA
AGGTTGGATGCCAGACCGATCCCAGCCTGACGATCAACAAGTTGCTGAGC
TGCGAGGTTTGCACCGAGGACGAGTGCAACGGAACCTCCTCCCTGGCCCC
CATCGCCGGAGTCATACTCCTGTTCTTTGGCCTGGCCCGTCTGCTAGCCG
CAAGCTTTCTAGACCAT
FMO12844.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:22:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9338-RB | 1087 | CG9338-RB | 79..519 | 9..449 | 2205 | 100 | Plus |
| CG9338-RA | 689 | CG9338-RA | 79..519 | 9..449 | 2205 | 100 | Plus |
| CG9336-RB | 636 | CG9336-RB | 211..509 | 154..449 | 450 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:22:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20866936..20867141 | 244..449 | 1030 | 100 | Plus |
| 2L | 23513712 | 2L | 20865411..20865585 | 69..243 | 875 | 100 | Plus |
| 2L | 23513712 | 2L | 20860693..20860887 | 255..449 | 345 | 78.5 | Plus |
| 2L | 23513712 | 2L | 20865293..20865354 | 9..70 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:22:25 has no hits.
FMO12844.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:58 Download gff for
FMO12844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9338-RA | 67..511 | 9..453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:32 Download gff for
FMO12844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9338-RA | 79..523 | 9..453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:13 Download gff for
FMO12844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9338-RA | 79..523 | 9..453 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:13 Download gff for
FMO12844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20866936..20867145 | 244..453 | 99 | | Plus |
| 2L | 20865293..20865353 | 9..69 | 100 | -> | Plus |
| 2L | 20865412..20865585 | 70..243 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:32 Download gff for
FMO12844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20865293..20865353 | 9..69 | 100 | -> | Plus |
| arm_2L | 20865412..20865585 | 70..243 | 100 | -> | Plus |
| arm_2L | 20866936..20867145 | 244..453 | 99 | | Plus |
