FMO12846.5prime Sequence
1108 bp (1031 high quality bases) assembled on 2013-01-29
> FMO12846.5prime
CAGTCGACATGGGTGGAATTCAGTACATCTGCCTGCTGGCTTTCATAATA
GGAGCATCATTATTGACAACAATCGATGCTAATTCGAGCCGAGATGTTAA
TGCCGAATTAAACAGGATTCCTGCTTCGAAATGGTTGCAATATGTAGAAA
CGGCGTTGGACTCAGTAAATAGGCAAAAGCGACTGGAGGACAATCTATTA
GGTTCCGATATCACTGTTAAGAACGGCAGCCTTTCACACGCTCAACTTCT
GGATACTTTACCAAGCCTAGCTTCGAAGAAGGACAATAAGCTCGCCCTGA
AGATCCTTAAGTCCAGCTTGCTCGTTTTCAACAGCGAATGCCTGCCTAAT
AATATCGATGGAGACAAGTGCCGCAGTTACCTGGAGCAAAAACCACTTCC
GGAGGGCAGTAGCTTGCGAACTGAGTGTGAGAACTCACTCAAGGGAAATC
GAGAGGGTCACTATGCTTTCAGAAGGCTACTTGGGAGCAGCCACTACAGG
AACGGTTTCTATCAGATGTTTCCCAATTCCGGAAGACGCGAAACAGTGCC
GGCTGCGTGGTCCATTAGTAAGGAGCTGTATGAGCCCGATCACATTCAGA
TCTCCAAACAACAAACCTTCGAAAGCAATTCCAATTTGGCCCTCCCTCAG
TGGGCTCAATTTGTGGAGCATGATCTTAGCAAGCCGGTGTCGCAATCAAT
GAGCAATGGAGCCCCAATAGAGTGCTGCAGCCGTGACCAGATCAACCTTC
AGCCGCGTCACCACCACCCGGCATGTGCTCCGATTCTGTACCAGCCCGGT
GGGAAATACGACGTGCCCAGCTGCCTTAACTATGTGCGAAGTGCTCTGGC
CGTGGCTGATTGCAATTTCGGTGGCGCCGAACAACTCAACCAGGCCACGG
GGTCCTTGGATCTATCGCAACTCTATGGTTTCACCGCAGCGGCGGAGAAG
AAGTGCGTGTTCTCGAGGGCGGTTGTTAAGTCAACTCCTCGTGAGAATTC
GACACGCCTCTGCCCATCGCCACGATACGGAAGAACATCGTTCTGCGCCA
CGAGCACAATTGGTGAATGCCCTGGCTTTGCTGCCCGGAATTCTCCGGGT
GAATTCCA
FMO12846.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:21:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irc-RB | 2390 | CG8913-RB | 202..1305 | 9..1104 | 5035 | 97.9 | Plus |
| Irc-RA | 2341 | CG8913-RA | 202..1305 | 9..1104 | 5035 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:21:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17004467..17004801 | 181..515 | 1675 | 100 | Plus |
| 3R | 32079331 | 3R | 17004864..17005053 | 514..703 | 950 | 100 | Plus |
| 3R | 32079331 | 3R | 17005170..17005351 | 703..884 | 910 | 100 | Plus |
| 3R | 32079331 | 3R | 17004204..17004300 | 85..181 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 17005424..17005633 | 885..1085 | 445 | 88.6 | Plus |
| 3R | 32079331 | 3R | 17003076..17003151 | 9..84 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:21:43 has no hits.
FMO12846.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:52 Download gff for
FMO12846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irc-RA | 193..1268 | 1..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:03 Download gff for
FMO12846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irc-RA | 195..1270 | 1..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:49 Download gff for
FMO12846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irc-RA | 195..1270 | 1..1069 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:49 Download gff for
FMO12846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17005424..17005616 | 885..1069 | 91 | | Plus |
| 3R | 17003069..17003151 | 1..84 | 95 | -> | Plus |
| 3R | 17004204..17004300 | 85..181 | 100 | -> | Plus |
| 3R | 17004468..17004801 | 182..515 | 100 | -> | Plus |
| 3R | 17004866..17005052 | 516..702 | 100 | -> | Plus |
| 3R | 17005170..17005351 | 703..884 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:03 Download gff for
FMO12846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12831146..12831338 | 885..1069 | 91 | | Plus |
| arm_3R | 12828791..12828873 | 1..84 | 95 | -> | Plus |
| arm_3R | 12829926..12830022 | 85..181 | 100 | -> | Plus |
| arm_3R | 12830190..12830523 | 182..515 | 100 | -> | Plus |
| arm_3R | 12830588..12830774 | 516..702 | 100 | -> | Plus |
| arm_3R | 12830892..12831073 | 703..884 | 100 | -> | Plus |
