FMO12847.5prime Sequence
1133 bp (1018 high quality bases) assembled on 2013-01-29
> FMO12847.5prime
CAGTCGACATGTGTGGCATATTCGCGTACCTAAACTACTTGACGCCCAAG
TCGCGACAGGAGGTCCTGGATCTCCTGTTGCAGGGACTGAAGCGGCTGGA
GTACCGCGGCTACGACTCCACGGGCATAGCCATCGATGCGCTGAACTCTG
GCGAGGCACAGTCCATAATGCTGGTGAAGCGCACCGGGAAGGTGAAGGTG
CTGGAGGATGCGGTGGCGGAGGTGTGTCGCGGCCAGGACTACTCGCTGCC
CATCGACACCCACATAGGCATAGCACACACGCGCTGGGCCACCCACGGTG
TGCCCTCCGAGGTCAACTCGCATCCGCAGCGATCCGATGAGGATAATAGC
TTTGTGGTGGTGCACAATGGCATTATAACCAACTACAAGGATGTGAAGAC
GCTGCTGGAGAAGCGCGGATATGTATTTGAGTCCGACACGGACACGGAGG
TGATTGCCAAGCTGGTACACCACCTGTGGCAGCAGCATCCTGGCTACACT
TTCGGCGAGCTCGTGGAGCAGGCCATTCAGCAGCTGGAGGGCGCCTTCGC
CATCGCCTTCAAGTCGAAGCACTTCCCGGGCGAGTGCGTGGCCTCCAGGC
GAGGCTCACCGCTTCTGGTGGGCATCAAGGCCAAGACCAAGCTGGCCACC
GATCACATACCCATCCTGTACGCCAAGGCCCATCGGCCACATGGTCAGCC
GCAGCAGCAGGCCTATCAACTATTGCCGCCCGGCGATTGCAACGCCGAGT
TTCAACCGCTGGAGCGCAAGGAAGTGGAGTACTTCTTCGCCTCGGACGCA
TCGGCTGTTATAGAGCACACGAATCGGGTGATTTACCTGGAAGATGACGA
CGTGACCGCCGTCAAGAGCGATGGCACGCTCAGCATTCATCGCCTAAACA
AATCATCCGATGATCCGCACGCCCGCGAGATCATCACGCTGAAAATGGAG
ATCCAGCCGATCATGAAGGGCACTACGACTACTTTATGCTGAAGGAAATC
TTCGAGCAGCCCGGAATTCGTGTACACCATGGCCGCAGGATGGAGTTCGA
AACGCGACCGTGGGTTCTGGGTGCATTCAGGAATACTTACGGAAATCAAG
CGCTGCGCGCTGGAGTCTAATTGCGTGGCACTC
FMO12847.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:21:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfat2-RA | 2545 | CG1345-RA | 220..1346 | 9..1127 | 5115 | 97.5 | Plus |
| Gfat1-RH | 2601 | CG12449-RH | 596..1010 | 258..672 | 455 | 74.6 | Plus |
| Gfat1-RD | 2363 | CG12449-RD | 394..808 | 258..672 | 455 | 74.6 | Plus |
| Gfat1-RH | 2601 | CG12449-RH | 1124..1367 | 768..1013 | 360 | 77.4 | Plus |
| Gfat1-RH | 2601 | CG12449-RH | 356..465 | 9..118 | 205 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:21:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28338543..28339546 | 1011..9 | 4925 | 99.6 | Minus |
| 3R | 32079331 | 3R | 4133499..4133913 | 258..672 | 455 | 74 | Plus |
| 3R | 32079331 | 3R | 4136484..4136589 | 909..1013 | 225 | 83 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:21:49 has no hits.
FMO12847.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:53 Download gff for
FMO12847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-RA | 214..1226 | 1..1011 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:05 Download gff for
FMO12847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-RA | 211..1223 | 1..1011 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:52 Download gff for
FMO12847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfat2-RA | 211..1223 | 1..1011 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:52 Download gff for
FMO12847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28338543..28339550 | 1..1011 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:05 Download gff for
FMO12847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24164265..24165272 | 1..1011 | 99 | | Minus |
