FMO12848.5prime Sequence
1109 bp (994 high quality bases) assembled on 2013-01-29
> FMO12848.5prime
CAGTCGACATGGTTTACTTTAGTCCGCGTGGCATGCAACCGTGTAGTCCA
GCGGGAGAAATCGCAATGATGCCGCCTTCGAAGAGCCCCGTGATGGAGAG
CGCCGCCTCCGAACAGAATCCTGCCCAGCAGAGCCAGCAGCAGGACGAGC
AGAGCGCCAAGCGGGCGTGTCCCCTAAAGTTTTCGATAGCCAAGATCATG
GAGCCGGATCACAGGCCCAGCCAAGTGCCACCGCCGCAGCCCGCTCCGGT
TTCCTTCGCCACCAACGATGACGACGAGGATGAGGATCCGGAGATCGATG
CCGACTCGGAGCGCTCCTGCAGCCCCATCGAGGTGATCAGCCTGGATCAG
TCGCCATCCACTGTCAACTATGACTCCGCTTTCAAGAAGTATGTGCCGGG
TCCGTGTTCGGGCGCCACTTCATCGGTGGCCTCGCCGCCGAGCACCGCTG
CTGTGCAGCAGTTTGTGAGCTCCCGCCACCAGGAGCTGCTCTCGCAGTAT
CCCCTGCTGTACTATGCACCCAATCAGCTGATGTGCGCCGCTGCTGCCGC
CCAATATGCAGCCCTTACCGCCCAACAGCAATCGCTGGCCAGCGCCGCCC
ACCTGAGCAGCTTCACCGCATCCCTGAATGCCAGCTTGCATCACTCGCAG
TCGCTGAGAAGAAATCTGGGTCATCCACTGGCCGCGGCAGCTGCCGTGGC
GGCAGTGGCCCAATCCCAGGCGGTGCCCAATTTGCAACATACCCTGAAAA
GTCGCCAGTGGCCCAGAGAACAGCCCAGAGTTCGGGATTGCAAGCTAACT
TGAAGAGGAAACGATCGCCGCATGATCAGGCGAAGTGACGCCGCTCCAGC
GTCTACTGCCACTTCCGCCACTGGAGCCAGATCCCGCTCCCCCTCGCCGC
AAGGATCCATCGAGGACAGCAGTCCCTGGATCGGCCAGTGGCGGCAAGCC
CAGGACCTTCTTCTGCCTGGGATGTGGCAAGGTGTTCAACGCCCACTTCA
ACCTCACCCGCTCAATGCCCGTCCACACGAGCCAAGGCCGTTTGTTTGCA
GTCTGCGGCTAGGATTCGCTCAGGCTCCATCCTGCGGCAAGATCTTCTCC
ACGTTCGAA
FMO12848.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:21:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| erm-RD | 2881 | CG31670-RD | 229..1288 | 9..1063 | 4970 | 98.4 | Plus |
| erm-RC | 2881 | CG31670-RC | 229..1288 | 9..1063 | 4970 | 98.4 | Plus |
| erm-RA | 2881 | CG31670-RA | 229..1288 | 9..1063 | 4970 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:21:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1951847..1952879 | 1050..21 | 4740 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:21:55 has no hits.
FMO12848.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:54 Download gff for
FMO12848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| erm-RA | 195..1259 | 9..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:10 Download gff for
FMO12848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| erm-RA | 229..1293 | 9..1067 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:56 Download gff for
FMO12848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| erm-RA | 229..1293 | 9..1067 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:56 Download gff for
FMO12848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1951827..1952879 | 21..1067 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:10 Download gff for
FMO12848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1951827..1952879 | 21..1067 | 98 | <- | Minus |
