FMO12849.5prime Sequence
639 bp (638 high quality bases) assembled on 2013-01-29
> FMO12849.5prime
CAGTCGACATGGACCTGGCTCAGTATCCGGTACTGCCGCGGGGAAGTCCG
GACGATCCGCTGGCCGATCCCTTCGACGATCCATCCTACAGCTTTAGTTT
TCGCACTCCGGATCAGTCGCGCAGCGAGGAGAATGATTCCGGGAATAGGA
TAAGAGGTCTGTACTCCTATTTGGACGACGTGGGCGAGCGGCACAGTGTT
CGTTATGCAGCTGGAGCCGGAACCGGATTCGAGATCTCCAACGCTGTGCC
GGACAGCCCATCTGTTGTGGCGTACTCCAGTCCTCTGTACACGTCCCATC
CCAAAGCACGCGGCAAGATGTCTGTGCAAAGGGGGCCGGCTGGAAGCTAT
AAGCTGATCGCCTCAGGTTCGGATCACCGACGGGCAGAAAGTCGAGCACC
CGATGGCCTGGTGCGAGGAACCTACTCCTTCCTGGACGACTAGGGCGTGC
AGCGGACAGTGGAGTATATAGCTGGAGCAGGAATTGGCTACCGGGTGGTG
CAAAATCGGATTGGTCCTGGAACCCATAACAATCCCTCTGTGGCTGATTT
TCGTTTGACAGATCCAGATTTCCGACTGGCTAATGATTTTGGCAGGGGTG
CTGGTGGTGGCTTACGTCCGAAGGGAGGTGGTGGTGGAT
FMO12849.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr73D-RC | 2676 | CG9665-RC | 1045..1675 | 9..639 | 3125 | 99.7 | Plus |
| Cpr73D-RB | 2158 | CG9665-RB | 527..1157 | 9..639 | 3125 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16940101..16940585 | 639..155 | 2395 | 99.6 | Minus |
| 3L | 28110227 | 3L | 16940635..16940783 | 157..9 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:23:09 has no hits.
FMO12849.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:01 Download gff for
FMO12849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr73D-RB | 292..931 | 1..639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:57 Download gff for
FMO12849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr73D-RB | 518..1157 | 1..639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:34 Download gff for
FMO12849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr73D-RB | 518..1157 | 1..639 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:34 Download gff for
FMO12849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16940101..16940583 | 157..639 | 99 | <- | Minus |
| 3L | 16940636..16940792 | 1..156 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:57 Download gff for
FMO12849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16933201..16933683 | 157..639 | 99 | <- | Minus |
| arm_3L | 16933736..16933892 | 1..156 | 97 | | Minus |
