FMO12852.5prime Sequence
997 bp (996 high quality bases) assembled on 2013-01-29
> FMO12852.5prime
CAGTCGACATGAGTGCCCTCATATTTCTGTGCGCGATTCTAATTGGTTTC
GTGATTTATTCACTCATCAGCTCGGCGCGGCGTCCCAAGAACTTTCCACC
AGGACCTCGATTTGTGCCATGGTTAGGAAACACATTACAGTTCCGTAAGG
AAGCTAGTGCTGTTGGCGGCCAGCACATCCTGTTCGAGCGCTGGGCAAAA
GACTTCCGGAGCGACCTGGTGGGTCTGAAGCTGGGCCGCGAATATGTGGT
GGTTGCCCTTGGCCACGAGATGGTGAAGGAAGTGCAGCTGCAGGAGGTGT
TCGAGGGGCGACCAGATAACTTCTTTCTGCGTCTGCGAACCATGGGAACC
CGCAAGGGCATCACCTGTACGGACGGACAGCTTTGGTACGAGCACCGACA
TTTTGCCATGAAGCAGATGCGCAACGTGGGCTACGGACGCAGCCAGATGG
AGCATCACATCGAACTGGAGGCGGAAGAGCTGCTGGGGCAGCTGGAGCGC
ACCGAGGAGCAGCCGATCGAGCCGGTCACTTGGCTGGCGCAGAGTGTACT
CAATGTACTGTGGTGTCTGATAGCTGGAAAGAGGATCGCCAGACAGGAGG
ATGGGACGTTGCGGCGTCTGCTCGACCTGATGAATCGGCGTTCCAAACTC
TTTGACATCTGCGGTGGTCTGCTGGCCCAGTTTCCCTGGCTGCGCCACGT
GGCCCCCGATCGCACTGGCTACAATCTCATCCAGCAACTGAACACAGAGC
TGTACGGTTTCTTTATGGACACCATCGAGGAGCACCGACGGCAGCTGGCG
AAAGGATCCGTCGCCGGCGGAAAGCGATCTCATCTATGCCTACCTCCAGG
AGATGAAGGACCGCAGTGCTGGCGGCGAGAGCAGCACATTCAATGAGACG
GCAGCTGGTGATGACCATCCTGACTTCTTCATTGCAGGCTCCCAGACCAC
TAGCATACGATCACCTGGCCCTAATGGTACTTTGCTATGCCCCCGGA
FMO12852.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp305a1-RA | 1801 | CG8733-RA | 138..1126 | 9..997 | 4795 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19811078..19811937 | 997..138 | 4000 | 99.2 | Minus |
| 3L | 28110227 | 3L | 19813108..19813202 | 103..9 | 475 | 100 | Minus |
| 3L | 28110227 | 3L | 19812170..19812210 | 140..100 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:23:19 has no hits.
FMO12852.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:02 Download gff for
FMO12852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 115..1109 | 1..996 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:03 Download gff for
FMO12852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 131..1125 | 1..996 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:37 Download gff for
FMO12852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 131..1125 | 1..996 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:37 Download gff for
FMO12852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19811079..19811934 | 141..996 | 99 | <- | Minus |
| 3L | 19812170..19812207 | 103..140 | 100 | <- | Minus |
| 3L | 19813109..19813208 | 1..102 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:03 Download gff for
FMO12852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19804179..19805034 | 141..996 | 99 | <- | Minus |
| arm_3L | 19805270..19805307 | 103..140 | 100 | <- | Minus |
| arm_3L | 19806209..19806308 | 1..102 | 96 | | Minus |
