FMO12855.5prime Sequence
1069 bp (1025 high quality bases) assembled on 2013-01-29
> FMO12855.5prime
CAGTCGACATGATGCAGCCAAGTGCGGTATTACTAACCACAATTATGATC
ATCTCCTGCGAAGTGGCATTCGCCTGCAATGGAAAGATAATTGCATCGGG
CATCACGGCGGAAGAGAGATCAATCATCTTGCAGGAGCACAATCGCCTCC
GGCAGATCGTGGCCACGGGTCGCTATCCAGGCCAGCCGGGTGCCGAGAAT
ATGCGGGAGATCGTCTGGGACGATGAGCTGGCCGCCAGAGCTCAGAAATG
GGCTGACAACTGCCAGTTCCGTCACGATCCGCACCGTACAATAAATCGCT
TTACGATGGGCCAGAATCTGGCCATCATCTGGAGTACGGCGCCTTTGGAT
GCCGATGACGGTGATTTCCCCTCTCGCATCCAGAGTTGGTTTAACGAGGT
GCAGAAGTACTCCTTCGGGGACGCCTGGTCCCCCAAAACTGGACACTATT
CCCAACTGGTTTGGGGTGAGACCAGCTTGGTGGGCTGTGGATATGCGGAG
TACAAGGATACCAGCAAGTACAACAAGCTCTACGTCTGCAATTATGGGCC
TGGTGGCAATGTGGTGGGCTACAATCCCTATGAGGTTGGAAAGCCATCGT
GCTCCACATACGGCATGAAGCCTTCGTCCCGCTACCAAGGACTCTGCGCC
GCTCCCGGATCCTCGCCAGCGGCCAACAGCGTTTACGGAGCAAACACAAT
TGAAACGTATGAGTACGGCTACAACAGCAGCCCTTCCAGTCAAACCGCCA
ATAACAATCCGCCGACTAACAACATTAACAAGAGCCAGTTCAGCTATAAC
CAACCAAGACCCAAGCCCGTCCAAACCATCAATCCAAATCCCTCCCCATT
CAACCCACAGGCAGCGGTACCATCAGCGTCGACCTTCGGCGGCAGTTCGT
TTGGCAGCGCCTCGAGGGGCGGCAGCCACGCCTACACCACGGACTCATCG
CAGTCGGCAGCCGCTATAAGCAAAGCTCGAGCGTATTCGGCCAGTTGCGC
CGAGTCGAAGAAGTCCGTACCCAGCCATACCATACTTACGCCACCCTATA
TTAAAGGCAAGATCACACG
FMO12855.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8483-RA | 1869 | CG8483-RA | 288..1318 | 9..1036 | 4900 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13209305..13209791 | 1036..553 | 2075 | 96.5 | Minus |
| 3R | 32079331 | 3R | 13210071..13210329 | 553..295 | 1295 | 100 | Minus |
| 3R | 32079331 | 3R | 13210897..13211098 | 294..93 | 1010 | 100 | Minus |
| 3R | 32079331 | 3R | 13214094..13214178 | 93..9 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:23:26 has no hits.
FMO12855.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:03 Download gff for
FMO12855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8483-RA | 288..1325 | 9..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:07 Download gff for
FMO12855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8483-RA | 288..1325 | 9..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:41 Download gff for
FMO12855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8483-RA | 288..1325 | 9..1045 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:41 Download gff for
FMO12855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13210897..13211097 | 94..294 | 100 | <- | Minus |
| 3R | 13214094..13214178 | 9..93 | 100 | | Minus |
| 3R | 13209298..13209790 | 554..1045 | 96 | <- | Minus |
| 3R | 13210071..13210329 | 295..553 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:07 Download gff for
FMO12855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9035020..9035512 | 554..1045 | 96 | <- | Minus |
| arm_3R | 9035793..9036051 | 295..553 | 100 | <- | Minus |
| arm_3R | 9036619..9036819 | 94..294 | 100 | <- | Minus |
| arm_3R | 9039816..9039900 | 9..93 | 100 | | Minus |
