Clone FMO12856 Report

Search the DGRC for FMO12856

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:128
Well:56
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCpr-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12856.5prime Sequence

963 bp (915 high quality bases) assembled on 2013-01-29

> FMO12856.5prime
CAGTCGACATGGCCAGCGAGCAAACGATTGATGGAGCAGCCGCAATTCCC
AGCGGCGGCGGCGACGAACCCTTCCTGGGACTGCTGGACGTGGCCCTATT
GGCGGTGCTAATCGGCGGCGCAGCCTTCTACTTCCTGCGTAGCCGCAAGA
AGGAGGAGGAGCCAACCAGGAGCTATTCCATACAACCCACCACAGTGTGC
ACCACCAGTGCGTCGGACAATTCGTTCATCAAGAAGCTCAAGGCATCCGG
ACGCAGTCTGGTCGTCTTCTATGGCTCACAGACCGGAACCGGCGAGGAGT
TCGCCGGCCGTCTGGCCAAGGAGGGCATTCGTTACCGTCTGAAGGGCATG
GTTGCCGATCCCGAGGAATGCGACATGGAGGAGCTGCTGCAGCTGAAGGA
CATCGACAACTCGCTGGCGGTCTTTTGCCTGGCCACCTACGGCGAGGGAG
ATCCCACTGACAACGCCATGGAGTTCTACGAGTGGATCACCAGCGGCGAT
GTCGATCTGAGCGGGCTAAATTATGCGGTCTTTGGCTTGGGCAACAAGAC
CTATGAGCACTACAACAAGGTGGCCATCTATGTGGACAAGCGACTGGAGG
AGCTGGGCGCCAACCGGGTCTTTGAACTGGGACTGGGCGACGATGATGCC
AACATCGAGGATGACTTTCATCACGTGGAAGGATCGCTTCTGGCCCGCCG
TGTGCGATTCACTTCGGCATCGAGGGCGGCGGCGAGGAAGTGCTCATCCG
CCAGTACCGTTTTGCTAGAACAGCCAGATGTGCAGCCTGACCGCATTTTA
CACGGGAGAGATCGCCCGCCTGCACTCGATTCAGATCAGCGCCCGCCCTT
CGACGCCAGAACTCATTCTTGTCCCCATCAAAGTGAACCGCGAGCTGCAC
AGGGCGGTTGCCGCTCTTGCATCCATTTGAATTGATATTCAGGGTTTCCA
GATGTGCCTACCA

FMO12856.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr-RD 2679 CG11567-RD 246..1160 8..922 4290 98.4 Plus
Cpr-RC 2581 CG11567-RC 148..1062 8..922 4290 98.4 Plus
Cpr-RA 2739 CG11567-RA 306..1220 8..922 4290 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6342727..6343071 185..529 1725 100 Plus
2L 23513712 2L 6342173..6342349 8..184 885 100 Plus
2L 23513712 2L 6344344..6344613 653..922 865 94.5 Plus
2L 23513712 2L 6344158..6344283 527..652 630 100 Plus
Blast to na_te.dros performed 2014-11-28 18:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 2305..2335 636..666 110 83.9 Plus

FMO12856.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:04 Download gff for FMO12856.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr-RA 360..1293 1..930 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:12 Download gff for FMO12856.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr-RA 296..1229 1..930 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:45 Download gff for FMO12856.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr-RA 296..1229 1..930 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:45 Download gff for FMO12856.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6344344..6344597 653..906 94 -> Plus
2L 6342163..6342349 1..184 97 -> Plus
2L 6342727..6343069 185..527 100 -> Plus
2L 6344159..6344283 528..652 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:12 Download gff for FMO12856.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6342163..6342349 1..184 97 -> Plus
arm_2L 6342727..6343069 185..527 100 -> Plus
arm_2L 6344159..6344283 528..652 100 -> Plus
arm_2L 6344344..6344597 653..906 94 -> Plus