FMO12856.5prime Sequence
963 bp (915 high quality bases) assembled on 2013-01-29
> FMO12856.5prime
CAGTCGACATGGCCAGCGAGCAAACGATTGATGGAGCAGCCGCAATTCCC
AGCGGCGGCGGCGACGAACCCTTCCTGGGACTGCTGGACGTGGCCCTATT
GGCGGTGCTAATCGGCGGCGCAGCCTTCTACTTCCTGCGTAGCCGCAAGA
AGGAGGAGGAGCCAACCAGGAGCTATTCCATACAACCCACCACAGTGTGC
ACCACCAGTGCGTCGGACAATTCGTTCATCAAGAAGCTCAAGGCATCCGG
ACGCAGTCTGGTCGTCTTCTATGGCTCACAGACCGGAACCGGCGAGGAGT
TCGCCGGCCGTCTGGCCAAGGAGGGCATTCGTTACCGTCTGAAGGGCATG
GTTGCCGATCCCGAGGAATGCGACATGGAGGAGCTGCTGCAGCTGAAGGA
CATCGACAACTCGCTGGCGGTCTTTTGCCTGGCCACCTACGGCGAGGGAG
ATCCCACTGACAACGCCATGGAGTTCTACGAGTGGATCACCAGCGGCGAT
GTCGATCTGAGCGGGCTAAATTATGCGGTCTTTGGCTTGGGCAACAAGAC
CTATGAGCACTACAACAAGGTGGCCATCTATGTGGACAAGCGACTGGAGG
AGCTGGGCGCCAACCGGGTCTTTGAACTGGGACTGGGCGACGATGATGCC
AACATCGAGGATGACTTTCATCACGTGGAAGGATCGCTTCTGGCCCGCCG
TGTGCGATTCACTTCGGCATCGAGGGCGGCGGCGAGGAAGTGCTCATCCG
CCAGTACCGTTTTGCTAGAACAGCCAGATGTGCAGCCTGACCGCATTTTA
CACGGGAGAGATCGCCCGCCTGCACTCGATTCAGATCAGCGCCCGCCCTT
CGACGCCAGAACTCATTCTTGTCCCCATCAAAGTGAACCGCGAGCTGCAC
AGGGCGGTTGCCGCTCTTGCATCCATTTGAATTGATATTCAGGGTTTCCA
GATGTGCCTACCA
FMO12856.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr-RD | 2679 | CG11567-RD | 246..1160 | 8..922 | 4290 | 98.4 | Plus |
Cpr-RC | 2581 | CG11567-RC | 148..1062 | 8..922 | 4290 | 98.4 | Plus |
Cpr-RA | 2739 | CG11567-RA | 306..1220 | 8..922 | 4290 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6342727..6343071 | 185..529 | 1725 | 100 | Plus |
2L | 23513712 | 2L | 6342173..6342349 | 8..184 | 885 | 100 | Plus |
2L | 23513712 | 2L | 6344344..6344613 | 653..922 | 865 | 94.5 | Plus |
2L | 23513712 | 2L | 6344158..6344283 | 527..652 | 630 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:23:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 2305..2335 | 636..666 | 110 | 83.9 | Plus |
FMO12856.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:04 Download gff for
FMO12856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr-RA | 360..1293 | 1..930 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:12 Download gff for
FMO12856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr-RA | 296..1229 | 1..930 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:45 Download gff for
FMO12856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr-RA | 296..1229 | 1..930 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:45 Download gff for
FMO12856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6344344..6344597 | 653..906 | 94 | -> | Plus |
2L | 6342163..6342349 | 1..184 | 97 | -> | Plus |
2L | 6342727..6343069 | 185..527 | 100 | -> | Plus |
2L | 6344159..6344283 | 528..652 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:12 Download gff for
FMO12856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6342163..6342349 | 1..184 | 97 | -> | Plus |
arm_2L | 6342727..6343069 | 185..527 | 100 | -> | Plus |
arm_2L | 6344159..6344283 | 528..652 | 100 | -> | Plus |
arm_2L | 6344344..6344597 | 653..906 | 94 | -> | Plus |