FMO12857.5prime Sequence
961 bp (960 high quality bases) assembled on 2013-01-29
> FMO12857.5prime
CAGTCGACATGCCAAAGGTACGCAGCACCCCGGGTAAGCCCCGGACGCAG
GGATTCAACCACTCAAACCACTCCATGAATCCGGAGCGCCCCAAAAGCGG
TCTCAAGGGAGTCGCCCACCCCCGCACTAAGGGCACCATCAAGCGGCTTC
AGATGTACCGTAACTTCAAGGCCAAGCGCGATCGCACTGGAAAGATCCTC
ACGCCCGCCCCCTTCCAGGGGCGCCTGCCTGCTGGAACAATGGCTCGAGT
TGAGCCTACGCCCAAGTGGTTTAGCAATTCCCGCGTTATCTCGCAAACTG
CTTTGCAAAAGTTCCAGGATGAGATTGGCAAGGCTGTCAAGGATCCCTAC
CAGGTGATCATGAAGCCATCCCAGTTACCGGTAACTTTACTGAACGAGGC
AGCAAAATACAAAAGGGTTCATTTGCTGGACACCGAGAGCTTCGACAGTA
CCTTTGGGCCCAAAAAGCAGCGCAAGCGCGTCAGCCTAAAGGTTCGCGAT
CTGGAAGATTTAAGCAAGGCGGCCGATGACCAGGCCGATAAGTACGATTC
AGCTAAGGATTTAGATCTAATCCGCGAGGATACTGGCGAAAAGAAGGCCG
TCCGTGATTGGGTGTTCGGTGCGGGGCAGAGTAAACGCATCTGGAACGAG
TTGCACAAGGTGGTCGATGCGTCCGATGTGCTGCTTCAGGTTCTTGATGC
CCGCGATCCCATGGGCACGCGCTCGAAGTACATTGAGGAGTTCTTGCGCA
AGGAAAAACCGCACAAACATCTATTTTTCATTCTGAACAAGTTGATCTGG
TACCGGTGTGGGTAACGCAGCGTTGGGTGGCTATTCTTAGTGCCGAATAT
CCTACTATTGCCTTCCATGCCTCCCTACACATCCTTTTGGAAAAGTGCGC
TCATCAATCTATTCCGTCAGTTGGGCAACTGCATTTGGACAAAAAACAGA
TCAGCGTGGGG
FMO12857.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ns2-RA | 2233 | CG6501-RA | 128..1084 | 8..960 | 4685 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17567053..17567733 | 895..217 | 3305 | 99.7 | Minus |
| 2R | 25286936 | 2R | 17568118..17568329 | 219..8 | 1060 | 100 | Minus |
| 2R | 25286936 | 2R | 17566928..17566994 | 960..895 | 285 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:23:39 has no hits.
FMO12857.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:04 Download gff for
FMO12857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ns2-RA | 110..1073 | 1..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:16 Download gff for
FMO12857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns2-RA | 121..1084 | 1..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:49 Download gff for
FMO12857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns2-RA | 121..1084 | 1..961 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:49 Download gff for
FMO12857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17566927..17566994 | 896..961 | 95 | <- | Minus |
| 2R | 17567053..17567731 | 219..895 | 99 | <- | Minus |
| 2R | 17568119..17568332 | 1..218 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:16 Download gff for
FMO12857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13454432..13454499 | 896..961 | 95 | <- | Minus |
| arm_2R | 13454558..13455236 | 219..895 | 99 | <- | Minus |
| arm_2R | 13455624..13455837 | 1..218 | 98 | | Minus |
