FMO12858.5prime Sequence
1119 bp (1029 high quality bases) assembled on 2013-01-29
> FMO12858.5prime
CAGTCGACATGTCGCATATTAAAAACCTAATACCGAGCACAGTGAATCCA
GATCTTCAAAAGGAACGTGCTGCAGCTGAATTCCATGTGGAGGAATTCTC
CGCCTGGTGGCACGGTGGTCAAGACAAACTGAAGAAGAAGCGCGAAATCG
AGAAAGCGATCTTCAGCGATCTTGAGGATGGCTATGGCCTCAACCATGAG
TACATGTCCCACGAGGAGGTCTACAATTCCACGGTGAAGAAGGTGGCTGA
GGCAGCTGTTAAGCTCAAGGCTCTGCAGAACAAGCTTAATCCTGGAGGAA
CTGACATCTGGCCTGGAGGACTATTCAATGCACAGAGCTTTGGACTTTTT
CCGGCTAATCATCCGATTGCCACCCACATCACCATGTTCGTGGATGTGAT
CAAAGGTCAGGGCACTGCCGAACAGGTGGAGAAGTGGGGCAAGGCGGCGG
AGAACTGCAACATTATCGGCACCTACGCCCAAACGGAGCTGGCCCATGGC
ACCAATGTCCGTGGCTTGGCCACTCGGGCTGACTTTGATCCCAAAACGGA
TGAGTTTGTGCTAAATACACCGAACTTGGAGGCCTACAAATGGTGGCCCG
GCGGCTTGGGACACACGGCCAATCATGCAATGGTAGTAGCCCAACTATAT
ATCGCCGATGTTCATCATGGCGTGCAAATGTTTATTGTGCCGTTAAGAGA
TTCCGAAACTCACATGCCACTGCCGGGTGTTGATATCGGTGAGATTGGCA
AGAAGCTCGGCATGGCATCCGTGAACCAGGGCTTCCTGGGACTGAACCAC
GTTCGAATTCCGCGCACCAACATGCTGATGAAGTTCGCCAAGGTGGAGCG
GGATGGCACCTTCAAGGCCAGCCCGGCATCGAGGATTAACTACCTGACCA
TGGTGTACACGCGCTGCTTGATCGTTAGCCAGAACTCCACGTTGCTCCTG
GCGGCGGCAACATAGCACGAGATACTCGGCAGTGCGGCGTCAGAGTCCAA
TGAGCCAATCACCCGAGCCAGATCATAAATCATGTTGACCACGCCTGAGC
TCTTTCCTTGAGATCGCTACCGGATCGCCTACATCTGTCACGAGATAATG
TTGGTAAGGAATGTCCCGG
FMO12858.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:22:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acox57D-d-RA | 2252 | CG9709-RA | 95..1183 | 9..1087 | 5055 | 98.4 | Plus |
| Acox57D-p-RB | 2235 | CG9707-RB | 515..673 | 467..625 | 180 | 74.2 | Plus |
| Acox57D-p-RA | 2552 | CG9707-RA | 832..990 | 467..625 | 180 | 74.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:22:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21390638..21391031 | 607..998 | 1870 | 99.5 | Plus |
| 2R | 25286936 | 2R | 21390283..21390575 | 314..606 | 1465 | 100 | Plus |
| 2R | 25286936 | 2R | 21390058..21390221 | 150..313 | 820 | 100 | Plus |
| 2R | 25286936 | 2R | 21389499..21389640 | 9..150 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:22:39 has no hits.
FMO12858.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:43:59 Download gff for
FMO12858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acox57D-d-RA | 95..1192 | 1..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:40 Download gff for
FMO12858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acox57D-d-RA | 86..1183 | 1..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:18 Download gff for
FMO12858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acox57D-d-RA | 86..1183 | 1..1087 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:18 Download gff for
FMO12858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21390283..21390575 | 314..606 | 100 | -> | Plus |
| 2R | 21389490..21389640 | 1..150 | 97 | -> | Plus |
| 2R | 21390059..21390221 | 151..313 | 100 | -> | Plus |
| 2R | 21390638..21391043 | 607..1008 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:40 Download gff for
FMO12858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17276995..17277145 | 1..150 | 97 | -> | Plus |
| arm_2R | 17277564..17277726 | 151..313 | 100 | -> | Plus |
| arm_2R | 17277788..17278080 | 314..606 | 100 | -> | Plus |
| arm_2R | 17278143..17278548 | 607..1008 | 98 | -> | Plus |
