Clone FMO12859 Report

Search the DGRC for FMO12859

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:128
Well:59
Vector:pMK33-CFH-BD
Associated Gene/TranscriptPka-R2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12859.5prime Sequence

792 bp (792 high quality bases) assembled on 2013-01-29

> FMO12859.5prime
CAGTCGACATGTCGAGCGATTCGAGTCGAAGGATCCAGGTGCCCGAGGAG
CTGAAGGAGGTGCTGCTGCAGTTCTCGATCTCCTTTCTGGTGGAACAACC
GCCGGATGTGATCGATTACGCTGTGGAGTACTTCACCAAACTGCAGTCGG
AACGCCCGAGCGTCTCTCACACGGATCAAAGCACCGATGACCAGCTGAGC
GTCAACTCACAGGATGCCGATGCGGAACCACCAGTGATGGCCAGCTCGCG
TCGCAAATCAGTTTTCGCCGAGGCCTACGATCCGGAGGCGGATGACGACG
ATGATGGCGCCACCGCCGTGTTCCCCAAGACAGATGAGCAGCGCGCCCGG
CTGGTCGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAGAAGGA
GCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGAATTGTTCAGCCGG
GTGACTTTATCATCCGCCAGGGTGACGACGGCGATAACTTTTATGTTATT
GAATCTGGCGTCTACAAAGTCTATATTAATGACAAGCACATTAACACCTA
CAATCACACTGGACTCTTCGGTGAATTAGCGCTGCTCTACAATATGCCCA
GAGCGGCCACCGTGCAGGCGGAACGAGTGGTCTACTTTGGGCCATGGATC
GCCAGACCTTCCGCCGCATCCTCTTGAAGTCGGCCTTCAGGAAGCGGAAA
ATGTACGAGGAGCTGTTGAATAGCGTGCCCCATGCTGAAGGCCTTGCAAA
CTACGAACGCATGAATCTGGTGGATGCCTTGGTTCCAAAGAG

FMO12859.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
Pka-R2-RE 2102 CG15862-RE 510..1294 9..792 3765 98.9 Plus
Pka-R2-RD 1614 CG15862-RD 353..1137 9..792 3765 98.9 Plus
Pka-R2-RB 4108 CG15862-RB 374..1158 9..792 3765 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10005157..10005370 222..9 1070 100 Minus
2R 25286936 2R 9999734..9999916 404..222 915 100 Minus
2R 25286936 2R 9998416..9998564 748..600 635 98 Minus
2R 25286936 2R 9999425..9999529 505..401 495 98.1 Minus
2R 25286936 2R 9998707..9998802 601..506 480 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:22:45 has no hits.

FMO12859.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:00 Download gff for FMO12859.5prime
Subject Subject Range Query Range Percent Splice Strand
Pka-R2-RC 292..1076 9..792 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:44 Download gff for FMO12859.5prime
Subject Subject Range Query Range Percent Splice Strand
Pka-R2-RB 374..1158 9..792 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:21 Download gff for FMO12859.5prime
Subject Subject Range Query Range Percent Splice Strand
Pka-R2-RB 374..1158 9..792 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:21 Download gff for FMO12859.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10005157..10005370 9..222 100   Minus
2R 9999425..9999525 405..505 98 <- Minus
2R 9999734..9999915 223..404 100 <- Minus
2R 9998415..9998562 602..748 97 <- Minus
2R 9998303..9998346 749..792 93 <- Minus
2R 9998707..9998802 506..601 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:44 Download gff for FMO12859.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5885808..5885851 749..792 93 <- Minus
arm_2R 5885920..5886067 602..748 97 <- Minus
arm_2R 5886212..5886307 506..601 100 <- Minus
arm_2R 5886930..5887030 405..505 98 <- Minus
arm_2R 5887239..5887420 223..404 100 <- Minus
arm_2R 5892662..5892875 9..222 100   Minus