FMO12859.5prime Sequence
792 bp (792 high quality bases) assembled on 2013-01-29
> FMO12859.5prime
CAGTCGACATGTCGAGCGATTCGAGTCGAAGGATCCAGGTGCCCGAGGAG
CTGAAGGAGGTGCTGCTGCAGTTCTCGATCTCCTTTCTGGTGGAACAACC
GCCGGATGTGATCGATTACGCTGTGGAGTACTTCACCAAACTGCAGTCGG
AACGCCCGAGCGTCTCTCACACGGATCAAAGCACCGATGACCAGCTGAGC
GTCAACTCACAGGATGCCGATGCGGAACCACCAGTGATGGCCAGCTCGCG
TCGCAAATCAGTTTTCGCCGAGGCCTACGATCCGGAGGCGGATGACGACG
ATGATGGCGCCACCGCCGTGTTCCCCAAGACAGATGAGCAGCGCGCCCGG
CTGGTCGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAGAAGGA
GCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGAATTGTTCAGCCGG
GTGACTTTATCATCCGCCAGGGTGACGACGGCGATAACTTTTATGTTATT
GAATCTGGCGTCTACAAAGTCTATATTAATGACAAGCACATTAACACCTA
CAATCACACTGGACTCTTCGGTGAATTAGCGCTGCTCTACAATATGCCCA
GAGCGGCCACCGTGCAGGCGGAACGAGTGGTCTACTTTGGGCCATGGATC
GCCAGACCTTCCGCCGCATCCTCTTGAAGTCGGCCTTCAGGAAGCGGAAA
ATGTACGAGGAGCTGTTGAATAGCGTGCCCCATGCTGAAGGCCTTGCAAA
CTACGAACGCATGAATCTGGTGGATGCCTTGGTTCCAAAGAG
FMO12859.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:22:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pka-R2-RE | 2102 | CG15862-RE | 510..1294 | 9..792 | 3765 | 98.9 | Plus |
Pka-R2-RD | 1614 | CG15862-RD | 353..1137 | 9..792 | 3765 | 98.9 | Plus |
Pka-R2-RB | 4108 | CG15862-RB | 374..1158 | 9..792 | 3765 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:22:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10005157..10005370 | 222..9 | 1070 | 100 | Minus |
2R | 25286936 | 2R | 9999734..9999916 | 404..222 | 915 | 100 | Minus |
2R | 25286936 | 2R | 9998416..9998564 | 748..600 | 635 | 98 | Minus |
2R | 25286936 | 2R | 9999425..9999529 | 505..401 | 495 | 98.1 | Minus |
2R | 25286936 | 2R | 9998707..9998802 | 601..506 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:22:45 has no hits.
FMO12859.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:00 Download gff for
FMO12859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pka-R2-RC | 292..1076 | 9..792 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:44 Download gff for
FMO12859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pka-R2-RB | 374..1158 | 9..792 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:21 Download gff for
FMO12859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pka-R2-RB | 374..1158 | 9..792 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:21 Download gff for
FMO12859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10005157..10005370 | 9..222 | 100 | | Minus |
2R | 9999425..9999525 | 405..505 | 98 | <- | Minus |
2R | 9999734..9999915 | 223..404 | 100 | <- | Minus |
2R | 9998415..9998562 | 602..748 | 97 | <- | Minus |
2R | 9998303..9998346 | 749..792 | 93 | <- | Minus |
2R | 9998707..9998802 | 506..601 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:44 Download gff for
FMO12859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5885808..5885851 | 749..792 | 93 | <- | Minus |
arm_2R | 5885920..5886067 | 602..748 | 97 | <- | Minus |
arm_2R | 5886212..5886307 | 506..601 | 100 | <- | Minus |
arm_2R | 5886930..5887030 | 405..505 | 98 | <- | Minus |
arm_2R | 5887239..5887420 | 223..404 | 100 | <- | Minus |
arm_2R | 5892662..5892875 | 9..222 | 100 | | Minus |