Clone FMO12860 Report

Search the DGRC for FMO12860

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:128
Well:60
Vector:pMK33-CFH-BD
Associated Gene/TranscriptVrp1-RF
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12860.5prime Sequence

1130 bp (1026 high quality bases) assembled on 2013-01-29

> FMO12860.5prime
CAGTCGACATGGCTATTCCGCCACCCCCGGGACCACCACCGCCGCCAGGA
CCTCCACCGCCTCCGGCGATGGGTGGTCTTAAATTGGGCGGCGCGGGAGG
AGCAGACGCCCGATCTGCACTGCTGAGTTCGATCCAGAAGGGAACAAAAC
TGAAGAAGACCACCACGGTGGACAAGAGTGGGCCAGCGCTGTCTGGCAAG
GTGTGCGGAGGAGATGGAGGAGCAGGTATCGGAGCTAAGCGAACCCTCAA
CAACAACACCAGCACCAGCAATCACAACAACAGCAGCAGTAGCAGCAATG
GCCTTGGCAATGGAACCCCCAAATTGGGAGGCCTGTTCGAAGGCCTCTCG
CAAATGCCAAAACTGAAGCCCGTGAACGGCATTCGCGCAACGCCATCCGC
CGGCTCGGCAGCAACAACGACATCGAAATCCACAACGAACTCATCCGCTC
AGCAGCGGAGCAACAGCCCCCCCGCCGCGACGAGCGCCTCGAATGCCAGC
AACGGACCCATGGACTTCAACACGGAGCTCACCAAGCACTTGACGTTGAA
GCGCCAAAAACAGCAGCAGCAGCAACAACCACAGCCACCAACCAACAACA
CACATATCAATGCAACAGAAGCCAATCTGAGAACAAATCGGGGACCACCA
CCGCAACCGCCAAAGTCAGCCAACTCAAATGATTCGATCTTGGAGCGCAT
GAACATCCCCCGCACAGCGCCGACACCCCCCTTCGGCAACAGTTCGAGTG
TCAAAGCGGCATCGCCCACGCTCTCGGACAGCGGCAGCAACAGCAGTGGG
AGTGGAGGTGGAAGTGGAAGTGTCAGAGCAAGGCGGCCAACCTAATATCT
CGTTAGGCAATAGTTTTGTAAATAGTTCAAAATCAACCGTGAGTGCCTCG
ACCGCGTCCTTAAACAGCAGTCTAACTCTCGACGGGATCAGTACGCAATT
CTGGCGCCAAATAAGTCACTCTATTTGGTGGCAGCAGTGGCTCTAGTTCC
GGTTCGAGTCTGTGGTGGTTATGCATCTGGTGCATAATCTCCGCCACCTC
AACGCAGAATAAGACCGCCGTCGTGACGCCCAAACCGGCACACGCTTCAG
CTGCGAATGAAGCGCCATCAGCTTTGGCAA

FMO12860.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
Vrp1-RK 3216 CG13503-RK 193..1322 9..1130 5115 97.7 Plus
Vrp1-RJ 3888 CG13503-RJ 671..1800 9..1130 5115 97.7 Plus
Vrp1-RI 3410 CG13503-RI 193..1322 9..1130 5115 97.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22112210..22112588 387..9 1895 100 Minus
2R 25286936 2R 22111862..22112140 665..387 1395 100 Minus
2R 25286936 2R 22111329..22111511 845..664 865 99.5 Minus
2R 25286936 2R 22110751..22110938 1029..846 670 95.2 Minus
Blast to na_te.dros performed 2014-11-28 18:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2316..2666 248..598 262 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6799..7312 207..718 242 53.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2490..2921 248..678 217 56.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2605..3012 237..651 211 56.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2337..2889 248..794 194 53.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6826 218..310 192 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6533..6960 251..677 191 56.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6945 248..468 186 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6793 237..298 184 77.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2822 218..678 180 55 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2407..2468 237..298 166 74.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2421..2482 248..309 166 74.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2561..3011 221..662 166 55 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1545..1586 248..289 165 88.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6814..7050 387..635 161 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1517..1575 244..302 160 74.6 Plus
TART-A 13424 TART-A 13424bp 11269..11379 232..345 157 63.5 Plus
TART-A 13424 TART-A 13424bp 91..201 232..345 157 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2783..3031 219..465 153 56.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6830..7259 217..631 149 54.8 Plus
roo 9092 roo DM_ROO 9092bp 1062..1167 209..312 147 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2440 209..297 143 64.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6826 209..298 140 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2779..2838 237..296 138 70 Plus
roo 9092 roo DM_ROO 9092bp 1095..1143 249..297 137 75.5 Plus
roo 9092 roo DM_ROO 9092bp 1059..1126 258..322 135 69.1 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 956..1022 236..298 135 73.1 Plus
Doc2-element 4789 Doc2-element DOC2 4789bp 550..590 248..288 133 80.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2775..2824 248..297 124 72 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2917..2978 249..310 121 66.1 Plus
TART-A 13424 TART-A 13424bp 896..953 248..306 121 69.5 Plus
TART-A 13424 TART-A 13424bp 12074..12131 248..306 121 69.5 Plus
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 4490..4555 230..294 120 66.7 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7144..7237 273..371 114 60.6 Plus
TART-C 11124 TART-C TARTC 11124bp 8597..8690 273..371 114 60.6 Plus
roo 9092 roo DM_ROO 9092bp 1071..1116 249..297 112 73.5 Plus

FMO12860.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:00 Download gff for FMO12860.5prime
Subject Subject Range Query Range Percent Splice Strand
Vrp1-RI 189..1215 9..1029 99 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:53 Download gff for FMO12860.5prime
Subject Subject Range Query Range Percent Splice Strand
Vrp1-RI 193..1219 9..1029 99 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:30 Download gff for FMO12860.5prime
Subject Subject Range Query Range Percent Splice Strand
Vrp1-RI 193..1219 9..1029 99 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:30 Download gff for FMO12860.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22111862..22112139 388..665 100 <- Minus
2R 22111328..22111509 666..845 98 <- Minus
2R 22110751..22110938 846..1029 96 <- Minus
2R 22112210..22112588 9..387 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:53 Download gff for FMO12860.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17998256..17998443 846..1029 96 <- Minus
arm_2R 17998833..17999014 666..845 98 <- Minus
arm_2R 17999367..17999644 388..665 100 <- Minus
arm_2R 17999715..18000093 9..387 100   Minus