FMO12861.5prime Sequence
1113 bp (1010 high quality bases) assembled on 2013-01-29
> FMO12861.5prime
CAGTCGACATGTTAATCGCGCTCTTCGCGCTTGCACACTTGCCAATCTTT
CGTAAGACGCCTTTGTCAGCCTCCTCCTCCCCGCCGCCGTCTGTCCACCG
GTCGCCAAGGTGTGGCAAAGCAAGTACCGCGTACCATCCACCGCCAGCAG
ACGCCTGCATCAGCATTACTGCTTCAGCCATTGACGCAGCATCCGGGATG
AGCAACAGCGCCGAACAGGACAAGCCGATTGCCGCCAACGGCAATGCGGC
AGAGCCCCAGGAAATAGAAGTCATCCATTTCCAAGCGCAAGAGAAGCAGT
GTTGCCGCGTTATTAGATCCAATAAGACCAAGGTCCTCACATCCGGCGGC
GTTCACACACGCGGTTCCTCCAAGGTCAAGCTAAAGAACATCGTCGACTA
CAAGTGGGAGCGCAAGTACTACTATCCGGGTCACCTGGTCGCTGTCCACC
GCGATGGCAAGCACCTGGCGTACGCCATTAATGTCAACAACAAAGCCACC
GGAATGGAGGGCATGGTGCGCGTATGCAACATAGCCACCAGTATGCGAGC
CTTGATCAAGGGAATGAGCGGCGAGGTCTTAGATCTGCAGTTTGCCCATA
CGGATTGTGAGCGTATATTAGCTGTGATCGATGTCAGTTCGCTGTTTGTC
TACAAAGTCGATCAAATCGAAGGGAACCTGCTGTGCAATCTAGTGCTAAA
GGTGGAGGACCCCATCGCCAACTATGTGCCGGAGTACGATATGGTCTCCT
GGTGTCCCTATGTCTGCAGCAGCAGCGCCACCGTTCCAATCAACGACGAT
GACGATGAGAATCAGCTGCTCATTTGGTCGCGAAGCTCTCAATTTCAATG
CTTTCAAGTGAAGATGATTGTCTCTGACATGGGCGCGGCAAGATCCAACC
AGCAGCCCTAGAATCCTGGATATCTGAGATTGAAGAGGACCTCGTTGATC
ACGTGCGCCGCTTTGTCCCCCGGATGGCACCACTGTGGCTGCCTGCTGGC
GCCGATGGCTTGGTCGCTTCTACAAATTTAATTTGTCGATGTGGCGCAAC
CATCGCTGCCTCCAAATGAAGCACATGATAGGAAAGCTCTGCCTTTCTCC
TTTTTTCTCGCAC
FMO12861.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:24:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ge-1-RB | 4932 | CG6181-RB | 330..1381 | 9..1061 | 4970 | 98.7 | Plus |
| Ge-1-RA | 4646 | CG6181-RA | 247..1298 | 9..1061 | 4970 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:24:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11099361..11099755 | 877..483 | 1975 | 100 | Minus |
| 2L | 23513712 | 2L | 11100294..11100559 | 274..9 | 1330 | 100 | Minus |
| 2L | 23513712 | 2L | 11100017..11100225 | 483..275 | 1045 | 100 | Minus |
| 2L | 23513712 | 2L | 11099120..11099296 | 1061..883 | 420 | 92.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:24:06 has no hits.
FMO12861.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:07 Download gff for
FMO12861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ge-1-RA | 219..1282 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:30 Download gff for
FMO12861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ge-1-RA | 241..1304 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:05 Download gff for
FMO12861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ge-1-RA | 241..1304 | 1..1069 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:05 Download gff for
FMO12861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11099114..11099295 | 884..1069 | 91 | <- | Minus |
| 2L | 11099354..11099754 | 484..883 | 99 | <- | Minus |
| 2L | 11100017..11100225 | 275..483 | 100 | <- | Minus |
| 2L | 11100294..11100563 | 1..274 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:30 Download gff for
FMO12861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11099114..11099295 | 884..1069 | 91 | <- | Minus |
| arm_2L | 11099354..11099754 | 484..883 | 99 | <- | Minus |
| arm_2L | 11100017..11100225 | 275..483 | 100 | <- | Minus |
| arm_2L | 11100294..11100563 | 1..274 | 98 | | Minus |
