FMO12866.5prime Sequence
993 bp (976 high quality bases) assembled on 2013-01-29
> FMO12866.5prime
CAGTCGACATGGCCGATCGCTTCCAGATCTCAAAGGTGAACGGCACCGCG
AACGCCGGCTACGATGGCGAGGCTAGATCAGCTGAATCCGACCAGACGGA
CGCAGCCCACCCACTTCCGCCCACCAGCAACGAAAACCACCTGCATCCCA
AGGCTTCGGGGGAGACGGGCGAGAACCGCCGCAGCTCCCGGCTCTCCTTC
CGCGGATTCGGTAACTTCCTGCGCAAATCGGACGCCGAGCGCAAGTTTAG
TCTCGCCCAGCTAACAAAGGAGAGTCTGCCGCGCCTGGACAACTACCGCA
TTTCCATGCGCAACCTCAAGCGTCCTTCTATCGGCGAACTTCAAGGAGAG
GCGGTCGACCAGAGCATCACTATTCCCGAACCCGAACCGGAGGCAACTGG
CGGACACATCAAGCTAGGATGGATCGTGGGCGTGCTGATACCTTGCCTTC
TCAACATCTGGGGCGTAATGCTCTTCCTGCGCCTCAGCTGGGTGGTGGCC
GAGTCGGGCATCCTGCAGTCCCTGATTATAATTACGATCTCCGCGGTGGT
CTGCGTCATCACGACGCTCTCGCTGTCGGCCATTAGCACCAACGGCGAGG
TCAAGGGCGGCGGCGTCTACTTCATCATATCCCGTTCGCTGGGCCCCGAG
TTTGGGGCGTCGGTGGGCGTGGTCTTCGCCTTCGCCAACGCCGTCTCAGC
CTCGATGAACACCATCGGCTTCTGCGAATCGCTAAATGTTTTACTCAAGA
CAACGACCTGAAGATTGTCGACACGGGATCAATGACATCCGGATCGTGGG
ATCGATAACCGTGCTGGTGCTCATCCTAATCTGCTGCGTGGTATGGAGTG
GGAGACGAAGGCGCAAACTTCCTGATCGTCACGATTGTCTTGCCCATCTT
CAATTTCCTGAATCGGAGCTGCCATTGGACTCAGGGTAATGAGGAGCAAA
TCTCTAGGGGTTTCGTCCGCCTTTTCCTGGGCTATTTTGAAGA
FMO12866.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:24:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31547-RB | 3891 | CG31547-RB | 406..1393 | 8..992 | 4685 | 98.7 | Plus |
| CG31547-RA | 3297 | CG31547-RA | 72..799 | 268..992 | 3385 | 98.2 | Plus |
| Ncc69-RG | 4762 | CG4357-RG | 1843..1897 | 444..498 | 185 | 89.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:24:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5493105..5493492 | 747..360 | 1940 | 100 | Minus |
| 3R | 32079331 | 3R | 5502036..5502297 | 269..8 | 1310 | 100 | Minus |
| 3R | 32079331 | 3R | 5492657..5492884 | 974..750 | 820 | 95.6 | Minus |
| 3R | 32079331 | 3R | 5498777..5498870 | 362..269 | 470 | 100 | Minus |
| 3L | 28110227 | 3L | 12374399..12374453 | 498..444 | 185 | 89.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:24:29 has no hits.
FMO12866.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:10 Download gff for
FMO12866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31547-RB | 401..1393 | 1..992 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:42 Download gff for
FMO12866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31547-RB | 401..1393 | 1..992 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:18 Download gff for
FMO12866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31547-RB | 401..1393 | 1..992 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:18 Download gff for
FMO12866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5502037..5502300 | 1..268 | 98 | | Minus |
| 3R | 5492653..5492887 | 748..979 | 94 | <- | Minus |
| 3R | 5493105..5493489 | 363..747 | 100 | <- | Minus |
| 3R | 5498777..5498870 | 269..362 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:42 Download gff for
FMO12866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1318375..1318609 | 748..979 | 94 | <- | Minus |
| arm_3R | 1318827..1319211 | 363..747 | 100 | <- | Minus |
| arm_3R | 1324499..1324592 | 269..362 | 100 | <- | Minus |
| arm_3R | 1327759..1328022 | 1..268 | 98 | | Minus |
