FMO12867.5prime Sequence
963 bp (963 high quality bases) assembled on 2013-01-29
> FMO12867.5prime
CAGTCGACATGCTCGTCTCAGGTGCCGACGAAGTAGTCAAGGATATAAAA
CAGCAAAACGACGAGCTGGGCAAACGCGGTAGCATTTTTGTGGAAGCGCC
TAGAGCAAGTCGTCGCCGAAGCTTTTATAATTTCTTTTTGCGTCATCAGG
ATGCTGTCGATGACAGCTTAACCTCACCTTCAGTACATAGAAAAACCGCA
ATGAACAACACGACCAACACCACCTCAAACTCCGCCTCCACCTCCGGCAC
GGCCTCCTCCACCGCCACCGCCCCAGCCACTGGGTGTGGCCCAGCAGCCA
CCTCCGCCTCCGACAGCGACCGACACCAGGCGGTGGGGGGTGGGTCGGCT
CCATCACGTAAGCGCGCCTCTAGTTTCATTCGCAAGAAACCGCCCCTAGA
AAGAGGTTTGTCAGCACAAAGCGCTTTAAGAGTAAACAAGAATGCTTTTG
TCTCTGAGGCGTCAGCCCCCGAGGTGATCGTCACCAGGCCGTCGCCAGAG
CAACAGACGCATCCGCACTCGCTGAGCCTGCGTCCGGACAACGCAACTCT
GGTCCACGTACTGGTACACCGCGAGAGCGAAGAGTATAAGGAGGAGGATG
AGAGCAGCCCGTCCGTGAGCGGCAACGGAAATGGTTTTGGTGTCGGCCTG
GACATGCTTAGCAAGCAGCCGCCGCCTCAGATACGCATCACAACGGGCTC
GGTAGAGAGCTCAATGGACACGTGCGCGATGCCCACAGTTCAGATCATGG
TGGACAGTCCGAAAGACCCGCCACGAGGCGATTTCAGCTCAGCACCGATT
GATGATGTGGGTGCGCCAATCGATGTGAATGTCCAGGGCGATACTCGCAG
GTGTTTTACGACTATAATCCTGAGAAAGCCACCGATGACCAAGGGAATGG
ACAGGACGAGACAGCGCAGTTCGAATCACTTCAGACAGACAGAGAGCAAG
CTTTCTAGACCAT
FMO12867.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:24:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NaCP60E-RP | 11475 | CG34405-RP | 8413..9351 | 9..945 | 4615 | 99.6 | Plus |
| NaCP60E-RO | 12475 | CG34405-RO | 9413..10351 | 9..945 | 4615 | 99.6 | Plus |
| NaCP60E-RN | 12573 | CG34405-RN | 9511..10449 | 9..945 | 4615 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:24:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24917648..24918141 | 454..945 | 2355 | 99.4 | Plus |
| 2R | 25286936 | 2R | 24917320..24917577 | 196..453 | 1275 | 99.6 | Plus |
| 2R | 25286936 | 2R | 24916771..24916890 | 76..195 | 600 | 100 | Plus |
| 2R | 25286936 | 2R | 24915395..24915462 | 9..76 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:24:35 has no hits.
FMO12867.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:10 Download gff for
FMO12867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NaCP60E-RD | 8211..9155 | 9..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:46 Download gff for
FMO12867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NaCP60E-RN | 9511..10455 | 9..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:21 Download gff for
FMO12867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NaCP60E-RN | 9511..10455 | 9..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:21 Download gff for
FMO12867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24915395..24915462 | 9..76 | 100 | -> | Plus |
| 2R | 24916772..24916890 | 77..195 | 100 | -> | Plus |
| 2R | 24917320..24917577 | 196..453 | 99 | -> | Plus |
| 2R | 24917648..24918147 | 454..952 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:46 Download gff for
FMO12867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20804295..20804413 | 77..195 | 100 | -> | Plus |
| arm_2R | 20804843..20805100 | 196..453 | 99 | -> | Plus |
| arm_2R | 20802918..20802985 | 9..76 | 100 | -> | Plus |
| arm_2R | 20805171..20805670 | 454..952 | 98 | | Plus |
