FMO12869.5prime Sequence
1038 bp (998 high quality bases) assembled on 2013-01-29
> FMO12869.5prime
CAGTCGACATGGCATCCACGTCGTCGTCGGCTTCCACGACGGCGGGATCC
TCCGGCGCGGCAGGCGGAGGAGCAGCCACGCCCATCTCAACGCCCTCGAC
GCCCCAGCCGTCTGGCGTGAGCAGCGGACCCGGCAATAATGGCAACAACA
ACAACAACCATCACAACAACACCCTGGTCTCACCATCCGGGAACAACAAC
TTGATGACGCCCGTCCAGGCATTCACTCCAACCGGACAGCCAGTGTACAA
TCCACCCGTCTATATGTCCGCCCACGGAGGACACCCGCACGCCGGAGCCC
ACTACCCGGCCATGATCCCCGCTCCGATGCCCAGCAATCACGTCTATGTG
AACAACGTCACTGCCAATGTGAACCTGCATGGCTGGCCGCACGGTGTTCC
GGCTTATATGCCACCCGGAGGTCAGCATCACTACATTGGACACGGCGACA
TGCCCCAGGAGCAGGGCAACACGGTGATGCCGCACCTGCAGCCTGTGCCC
ATTAATTTGGCGCCCCAGGGCGGATCTCCGAATCCCCATGGTCCTAGAAT
GGGTGGCGGACGGATGCGCGAACGAGGTCGTCCCCGTGGCGGTGGACCGC
GACGCAATGACTACCATGGGCCACGTCACCTCCAGCAGCAGCAACTGATC
ACCCTTCCGCCGCAGCAGCAACTGCCACCGCCGGACGGAGCCAATCCCGG
GCTGCAGCTTCAGCCGGATCAGATTGGTCAGCAGTTGGCGCCGCCGGAGG
CGCACATGCAGCACTTACAGCAGTACTACGCGGCGCCACCAACCTACGCC
TACGGGCCATATCCCTCTCCCTACTTCACACCCCAACATGCCAATGTGCA
GCCTCCCCCAATGCCACTGCTGCCCACAGGCACTGGAACGCCGCTCTTCA
TCTCCGGACCGCTGATGTATAATCCTGCGTGGTTCAACCACGGTGGGTTA
CTCTACCCCCTGATGCATCCGGGCTGAGTACCAGTATGTTACCCGAGACG
CTGGGCCATCCGGGGATGGGATAGAACTGTGGGAGATT
FMO12869.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:24:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32479-RC | 7873 | CG32479-RC | 181..1188 | 8..1014 | 4805 | 98.9 | Plus |
| CG32479-RA | 6346 | CG32479-RA | 447..1454 | 8..1014 | 4805 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:24:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 873988..874532 | 462..1004 | 2410 | 97.8 | Plus |
| 3L | 28110227 | 3L | 873419..873876 | 8..465 | 2290 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:24:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6896 | 627..793 | 146 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6947 | 597..802 | 133 | 54.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6920 | 604..793 | 132 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2546 | 620..796 | 121 | 55.8 | Plus |
| G2 | 3102 | G2 G2 3102bp | 436..476 | 47..86 | 112 | 78 | Plus |
FMO12869.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:12 Download gff for
FMO12869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32479-RA | 437..1457 | 1..1022 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:53 Download gff for
FMO12869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32479-RA | 441..1461 | 1..1022 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:28 Download gff for
FMO12869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32479-RA | 441..1461 | 1..1022 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:28 Download gff for
FMO12869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 873413..873875 | 1..464 | 99 | -> | Plus |
| 3L | 873991..874548 | 465..1022 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:53 Download gff for
FMO12869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 873413..873875 | 1..464 | 99 | -> | Plus |
| arm_3L | 873991..874548 | 465..1022 | 97 | | Plus |
