FMO12870.5prime Sequence
1129 bp (1025 high quality bases) assembled on 2013-01-29
> FMO12870.5prime
CAGTCGACATGGATGGTTCAAAGAAAACGCTGCTCATTAAAATAAGCGCG
AACGGCACTTCGCATTTCTACACTCCGGTGGCGGGCTATCCTGGCCCAGG
ACCTGCGGGCAATGGTCCACCACACTATCACTTGCCGCCACCACCGCCGC
CGCAACAGCAGCAGCAGCAGCCACCACAACAACCACAGCAGCAGGCGCCA
CAAGGACCACCACCGCCACAGCAACAACAACAACAGCAGCAGCAGGTGGC
ACCACCTGCGGTCCAAGGAGCACCAAGCACTGGAAGTGTAGGAGCTGCCC
AAGGAGCACCAGCCACTGCGACAGCCACCCATACACACGCCCATTCGCAC
TCCCACTCACACGCCCACTCGCACACACATCCCCAGCCACATGCACATTC
CCCGCACTCGCCATCGCCGCCCAATTATCGGGATGAACGCAGCCAGCGGC
AGCACAACAAGCTGCTCCGGAAGCTGGAGAAGCAGCGGGAGTCAAATCCC
CCGCATTCGCCATCTCCACGTCGTGCCAACGAACTGAATGGTCACAATAA
TAACAACATTCCTCCGGGTGTGCCCCTGCCCGGTCACCTCAATAACCACC
ATCATGCAGTGAACCATCAAGGACGTCGCCTGCCGCAGCAGCACCAAGGG
CAGGCCCATCAGGTGGCACAGCAGCAACAGTCGCAGGCCAGGAACGGGAA
ATCCGCAGCATCCCCAGAGAGCCGGCAGCAGTGTGGGTGGCGCCAGCTCC
GTGGGAACTTCCGAGGATGGCGAGGATAACTCCAGTCTGGCCGGCGATGA
TGAGGAGGAGTACCATCGCGAGAACAGCATCATTGAGCAAATCTCAGCTA
TTGAAAACCTGAGGTAATCGATGTGACTTCGCGGGCGGCCAGATATTTGG
GAGAGTCCAGCCATTGCGAATACAGTGACGGTGGATATGCGGCAGCTCCG
GTACCAGTGCTCCTCTGTGATTCTGGAAAGCAGTGCAAGTACAGAGCTTG
TACAAGCGAGGCCTACGAGTGCATTGGTGCAGACTGCAGCCGGGTCAGAA
TACCTAGTTCCGCTGGCAGGTGCACTACAAAACTACGGAACGTGAGTGAA
TCCCACGAATTCCGAGCCCCTGTGATCGA
FMO12870.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42389-RG | 4759 | CG42389-RG | 301..1415 | 9..1111 | 5075 | 98 | Plus |
| CG42389-RH | 7708 | CG42389-RH | 2060..3141 | 42..1111 | 4910 | 98 | Plus |
| CG42389-RF | 6365 | CG42389-RF | 1923..3004 | 42..1111 | 4910 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16658024..16658617 | 496..1082 | 2350 | 96.1 | Plus |
| 2L | 23513712 | 2L | 16657499..16657952 | 42..495 | 2270 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:23:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1057..1144 | 596..686 | 141 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2390 | 632..717 | 139 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6858 | 595..730 | 139 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6812..6913 | 630..731 | 131 | 62.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1082..1132 | 636..686 | 120 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6883 | 613..717 | 115 | 58.9 | Plus |
FMO12870.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:05 Download gff for
FMO12870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42389-RG | 281..1385 | 6..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:20 Download gff for
FMO12870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42389-RG | 299..1403 | 6..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:54 Download gff for
FMO12870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42389-RG | 299..1403 | 6..1099 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:54 Download gff for
FMO12870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16657395..16657429 | 6..41 | 97 | -> | Plus |
| 2L | 16657499..16657952 | 42..495 | 100 | -> | Plus |
| 2L | 16658024..16658639 | 496..1099 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:20 Download gff for
FMO12870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16657395..16657429 | 6..41 | 97 | -> | Plus |
| arm_2L | 16657499..16657952 | 42..495 | 100 | -> | Plus |
| arm_2L | 16658024..16658639 | 496..1099 | 96 | | Plus |
