FMO12871.5prime Sequence
994 bp (950 high quality bases) assembled on 2013-01-29
> FMO12871.5prime
CAGTCGACATGAGGCAGCCAAGTAGACAGCACATCCTGGCGCTCCTGATC
CTCGGCAGCGCCGCCTGCCTCATCAGCGCCGTACCGCTACCGCAGCCCGC
CAACGGTAATTCCGAGCTGGACGTCCTCCAAATCCCGCTTGCCAATGGCA
AGGAAATCGATGTCTTGACATTGGGCGCCAAAGACCAAGAATCATTGATA
GCCGATCGCAACAAACGAACGATTGGACTGCTGCGCGAACTTTTCCCCGA
CATCACCAAGAATGGAGCCACTGATACCCAGATCGATTTGTCGGCCATCA
ACAAGCAATTGGAGGAGACAATCCGTGTGGCCCGCCAGGTGAAGGAGGCG
GAAGCAGCCGCCGCCGCAGTTGCCGCCCAGTCCCTGTCCCCATCCTCGTC
CTCCGCCTCCTCGCCGGTCGCCCAGGCTCCCATTCCCCTCAAATCCAACG
AGCCCATCCAGCTGAGCTTCAACAACGAACTGCCCAGTGTCTCGCCGTCC
TCCGGTGTGAACGAAAAGGCCCTGAGCACCAATGATCTCCAGCTCTCCGA
GTCCAAGTCGCCGGCGATCGATGAACTCACCCTAGACTCTGCGGAGGAGA
CCGCCGATCTGGACGATCGCAACAAGAGTAATCTGTTCAAAAGGTTCCTC
AGCTTTGGCGGTGCGGGTCTCGCCGGCGGCTCAAGCGGCGGTGCAGGAGG
TTCGCCCAGTGGCAATGCTCTGGGAGCCGGCGGCTCCGGCAACTTCCTGC
TGGATGTGGTGAGGCTCTTTTCGGGCAGTGTTCAGACCCAGCAGGCGATG
AGGCGGCCAACTCGGTGGGCGGCAGTGCAGGCAGCAGCAGTAGCAGCGGC
AGTTTGGGCGGCGATGGTGACGCCGATGGCGATAGCACTCGCAACGCCGA
TGGCTACCCCGAGGGTATTCCCGCCCAGTCCGCGCCTCGAGAGTCGCCAA
TCGAGGTCTGTCCATCTCTCCAAGAAATTAATTCAGCGCGTCGC
FMO12871.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32694-RC | 2528 | CG32694-RC | 334..1323 | 8..991 | 4575 | 98 | Plus |
CG32694-RA | 2440 | CG32694-RA | 246..1235 | 8..991 | 4575 | 98 | Plus |
CG32694-RF | 2425 | CG32694-RF | 246..1220 | 8..991 | 4340 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10004389..10004759 | 258..628 | 1855 | 100 | Plus |
X | 23542271 | X | 9993045..9993190 | 8..153 | 730 | 100 | Plus |
X | 23542271 | X | 10005374..10005534 | 764..923 | 710 | 97.5 | Plus |
X | 23542271 | X | 10005148..10005289 | 623..764 | 695 | 99.3 | Plus |
X | 23542271 | X | 9999191..9999300 | 151..260 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:23:53 has no hits.
FMO12871.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:06 Download gff for
FMO12871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-RA | 243..1186 | 1..947 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:22 Download gff for
FMO12871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-RA | 243..1186 | 1..947 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:56 Download gff for
FMO12871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32694-RA | 243..1186 | 1..947 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:56 Download gff for
FMO12871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9993042..9993189 | 1..152 | 97 | -> | Plus |
X | 9999193..9999300 | 153..260 | 100 | -> | Plus |
X | 10004392..10004759 | 261..628 | 100 | -> | Plus |
X | 10005154..10005289 | 629..764 | 100 | -> | Plus |
X | 10005375..10005534 | 765..923 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:22 Download gff for
FMO12871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9887075..9887222 | 1..152 | 97 | -> | Plus |
arm_X | 9893226..9893333 | 153..260 | 100 | -> | Plus |
arm_X | 9898425..9898792 | 261..628 | 100 | -> | Plus |
arm_X | 9899187..9899322 | 629..764 | 100 | -> | Plus |
arm_X | 9899408..9899567 | 765..923 | 97 | == | Plus |