Clone FMO12871 Report

Search the DGRC for FMO12871

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:128
Well:71
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG32694-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12871.5prime Sequence

994 bp (950 high quality bases) assembled on 2013-01-29

> FMO12871.5prime
CAGTCGACATGAGGCAGCCAAGTAGACAGCACATCCTGGCGCTCCTGATC
CTCGGCAGCGCCGCCTGCCTCATCAGCGCCGTACCGCTACCGCAGCCCGC
CAACGGTAATTCCGAGCTGGACGTCCTCCAAATCCCGCTTGCCAATGGCA
AGGAAATCGATGTCTTGACATTGGGCGCCAAAGACCAAGAATCATTGATA
GCCGATCGCAACAAACGAACGATTGGACTGCTGCGCGAACTTTTCCCCGA
CATCACCAAGAATGGAGCCACTGATACCCAGATCGATTTGTCGGCCATCA
ACAAGCAATTGGAGGAGACAATCCGTGTGGCCCGCCAGGTGAAGGAGGCG
GAAGCAGCCGCCGCCGCAGTTGCCGCCCAGTCCCTGTCCCCATCCTCGTC
CTCCGCCTCCTCGCCGGTCGCCCAGGCTCCCATTCCCCTCAAATCCAACG
AGCCCATCCAGCTGAGCTTCAACAACGAACTGCCCAGTGTCTCGCCGTCC
TCCGGTGTGAACGAAAAGGCCCTGAGCACCAATGATCTCCAGCTCTCCGA
GTCCAAGTCGCCGGCGATCGATGAACTCACCCTAGACTCTGCGGAGGAGA
CCGCCGATCTGGACGATCGCAACAAGAGTAATCTGTTCAAAAGGTTCCTC
AGCTTTGGCGGTGCGGGTCTCGCCGGCGGCTCAAGCGGCGGTGCAGGAGG
TTCGCCCAGTGGCAATGCTCTGGGAGCCGGCGGCTCCGGCAACTTCCTGC
TGGATGTGGTGAGGCTCTTTTCGGGCAGTGTTCAGACCCAGCAGGCGATG
AGGCGGCCAACTCGGTGGGCGGCAGTGCAGGCAGCAGCAGTAGCAGCGGC
AGTTTGGGCGGCGATGGTGACGCCGATGGCGATAGCACTCGCAACGCCGA
TGGCTACCCCGAGGGTATTCCCGCCCAGTCCGCGCCTCGAGAGTCGCCAA
TCGAGGTCTGTCCATCTCTCCAAGAAATTAATTCAGCGCGTCGC

FMO12871.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG32694-RC 2528 CG32694-RC 334..1323 8..991 4575 98 Plus
CG32694-RA 2440 CG32694-RA 246..1235 8..991 4575 98 Plus
CG32694-RF 2425 CG32694-RF 246..1220 8..991 4340 96.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10004389..10004759 258..628 1855 100 Plus
X 23542271 X 9993045..9993190 8..153 730 100 Plus
X 23542271 X 10005374..10005534 764..923 710 97.5 Plus
X 23542271 X 10005148..10005289 623..764 695 99.3 Plus
X 23542271 X 9999191..9999300 151..260 550 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:23:53 has no hits.

FMO12871.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:06 Download gff for FMO12871.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32694-RA 243..1186 1..947 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:22 Download gff for FMO12871.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32694-RA 243..1186 1..947 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:56 Download gff for FMO12871.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32694-RA 243..1186 1..947 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:56 Download gff for FMO12871.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9993042..9993189 1..152 97 -> Plus
X 9999193..9999300 153..260 100 -> Plus
X 10004392..10004759 261..628 100 -> Plus
X 10005154..10005289 629..764 100 -> Plus
X 10005375..10005534 765..923 97 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:22 Download gff for FMO12871.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9887075..9887222 1..152 97 -> Plus
arm_X 9893226..9893333 153..260 100 -> Plus
arm_X 9898425..9898792 261..628 100 -> Plus
arm_X 9899187..9899322 629..764 100 -> Plus
arm_X 9899408..9899567 765..923 97 == Plus