Clone FMO12872 Report

Search the DGRC for FMO12872

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:128
Well:72
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12872.5prime Sequence

1156 bp (1045 high quality bases) assembled on 2013-01-29

> FMO12872.5prime
CAGTCGACATGGCAACGCTGCCCGAAAGACCGAAATTACTTGGTTTTTAT
TTTGACAACAAATTGGATAAAATGAGTGGCTTGAAGGCGAAAAAATCCAG
CAAGGGCGACCAAATCCCCAAGCCCATTAGCATTAAGAAGGAGAAGATCG
AGGAGGAACGAAAGCTGCATCCCATGTCCCATTACATAGACGACCGCCTG
GAATTGGTGAAACAGATATTTGGGACCTTAAAACCGAAAACCATTTTGAA
CCTAGCCCCAGAGTTTCTAAAGAAAACGCCACTAGACGAAATCGAGGAAC
TTTGTCTGGAGGAGTTACTCTGCTTGTCTACGAAGCGGCTAAAATCCATA
ATAGAAAACACCAAATGTCCCACAGACACTGAAAGCTCCGAAGATTCCGA
TGTGGAGCACAAAGAAGAACACATCTCGCTAGAGGAGATATCATCCGACA
GCGACATCGGAGGTCAGGAATCCCGAAAAACCAAGAAGAAGCTTAGATCC
AAGAAAACGAACAATGGGAATGAAAACAAAGAGTCGGGTGGTCAAATGAG
CGTGCTGGAACTGTTGGAACTTCAGGCACGTGCCAGGGCCATCCGCTCCC
AACTGGCAATGGAGCCAATCACCAAAATAGAGGTCAAGTCAGATGATGAT
ATTGACGAAGTACCAGTGGAGAAAGTACAGCGAAAGGAAAAGGATAAACG
CAGCACTAAAAAAACGGATTCGAGCAAGCGCAAATCGCAGGAATCAGCTA
GACCAACATCTCCATCCCAGCCTGATAGCAGCAGCAAGGAGCAGAAGCGC
CCCGCAAAAGAATCAAGATCAAAAGAAACTATAGGCGGACTTCAAAGTCG
CCAGAAAAGGAAGTCAAACCTCCAACATCTACTACTTCATCCGAAACTTT
GGTTGCATCTAACGATTTAAACAAACTGCCACGTTCCAAATCACGTTCAG
CCTCACCAGATGTGATACCTATACAAACGGAACCCGAAACACTGCTGATC
AGCGACAGTACGGATGATGAGGCCACCAAAAAGAAGAAAAACTGAAACAC
TACACTAGCAGGTCGGATTCGGACCCACCAGCCCAGTCGTTGAAGGGGAG
CCTAAGGAAGGGGAGAATGCGCGATGACCGAAAGCCGCCTAGGTATGACT
GCATCG

FMO12872.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG32176-RA 1928 CG32176-RA 8..1127 10..1127 5260 98.4 Plus
CG12229-RA 1960 CG12229-RA 55..108 534..481 270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17436513..17437016 535..1037 2470 99.8 Plus
3L 28110227 3L 17433875..17434137 10..272 1315 100 Plus
3L 28110227 3L 17434187..17434333 271..417 735 100 Plus
3L 28110227 3L 17434392..17434456 416..480 325 100 Plus
3L 28110227 3L 17436324..17436377 481..534 270 100 Plus
Blast to na_te.dros performed 2014-11-28 18:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
Doc4-element 2791 Doc4-element DOC4 2791bp 774..850 202..281 122 66.7 Plus

FMO12872.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:06 Download gff for FMO12872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32176-RA 1..1101 7..1102 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:26 Download gff for FMO12872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32176-RA 3..1103 2..1102 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:00 Download gff for FMO12872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32176-RA 3..1103 2..1102 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:00 Download gff for FMO12872.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17433870..17434137 2..272 98 -> Plus
3L 17434189..17434333 273..417 100 -> Plus
3L 17434394..17434456 418..480 100 -> Plus
3L 17436324..17436377 481..534 100 -> Plus
3L 17436513..17437083 535..1102 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:26 Download gff for FMO12872.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17427289..17427433 273..417 100 -> Plus
arm_3L 17427494..17427556 418..480 100 -> Plus
arm_3L 17429424..17429477 481..534 100 -> Plus
arm_3L 17426970..17427237 2..272 98 -> Plus
arm_3L 17429613..17430183 535..1102 97   Plus