FMO12872.5prime Sequence
1156 bp (1045 high quality bases) assembled on 2013-01-29
> FMO12872.5prime
CAGTCGACATGGCAACGCTGCCCGAAAGACCGAAATTACTTGGTTTTTAT
TTTGACAACAAATTGGATAAAATGAGTGGCTTGAAGGCGAAAAAATCCAG
CAAGGGCGACCAAATCCCCAAGCCCATTAGCATTAAGAAGGAGAAGATCG
AGGAGGAACGAAAGCTGCATCCCATGTCCCATTACATAGACGACCGCCTG
GAATTGGTGAAACAGATATTTGGGACCTTAAAACCGAAAACCATTTTGAA
CCTAGCCCCAGAGTTTCTAAAGAAAACGCCACTAGACGAAATCGAGGAAC
TTTGTCTGGAGGAGTTACTCTGCTTGTCTACGAAGCGGCTAAAATCCATA
ATAGAAAACACCAAATGTCCCACAGACACTGAAAGCTCCGAAGATTCCGA
TGTGGAGCACAAAGAAGAACACATCTCGCTAGAGGAGATATCATCCGACA
GCGACATCGGAGGTCAGGAATCCCGAAAAACCAAGAAGAAGCTTAGATCC
AAGAAAACGAACAATGGGAATGAAAACAAAGAGTCGGGTGGTCAAATGAG
CGTGCTGGAACTGTTGGAACTTCAGGCACGTGCCAGGGCCATCCGCTCCC
AACTGGCAATGGAGCCAATCACCAAAATAGAGGTCAAGTCAGATGATGAT
ATTGACGAAGTACCAGTGGAGAAAGTACAGCGAAAGGAAAAGGATAAACG
CAGCACTAAAAAAACGGATTCGAGCAAGCGCAAATCGCAGGAATCAGCTA
GACCAACATCTCCATCCCAGCCTGATAGCAGCAGCAAGGAGCAGAAGCGC
CCCGCAAAAGAATCAAGATCAAAAGAAACTATAGGCGGACTTCAAAGTCG
CCAGAAAAGGAAGTCAAACCTCCAACATCTACTACTTCATCCGAAACTTT
GGTTGCATCTAACGATTTAAACAAACTGCCACGTTCCAAATCACGTTCAG
CCTCACCAGATGTGATACCTATACAAACGGAACCCGAAACACTGCTGATC
AGCGACAGTACGGATGATGAGGCCACCAAAAAGAAGAAAAACTGAAACAC
TACACTAGCAGGTCGGATTCGGACCCACCAGCCCAGTCGTTGAAGGGGAG
CCTAAGGAAGGGGAGAATGCGCGATGACCGAAAGCCGCCTAGGTATGACT
GCATCG
FMO12872.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:24:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32176-RA | 1928 | CG32176-RA | 8..1127 | 10..1127 | 5260 | 98.4 | Plus |
CG12229-RA | 1960 | CG12229-RA | 55..108 | 534..481 | 270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17436513..17437016 | 535..1037 | 2470 | 99.8 | Plus |
3L | 28110227 | 3L | 17433875..17434137 | 10..272 | 1315 | 100 | Plus |
3L | 28110227 | 3L | 17434187..17434333 | 271..417 | 735 | 100 | Plus |
3L | 28110227 | 3L | 17434392..17434456 | 416..480 | 325 | 100 | Plus |
3L | 28110227 | 3L | 17436324..17436377 | 481..534 | 270 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:24:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc4-element | 2791 | Doc4-element DOC4 2791bp | 774..850 | 202..281 | 122 | 66.7 | Plus |
FMO12872.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:06 Download gff for
FMO12872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-RA | 1..1101 | 7..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:26 Download gff for
FMO12872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-RA | 3..1103 | 2..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:00 Download gff for
FMO12872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-RA | 3..1103 | 2..1102 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:00 Download gff for
FMO12872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17433870..17434137 | 2..272 | 98 | -> | Plus |
3L | 17434189..17434333 | 273..417 | 100 | -> | Plus |
3L | 17434394..17434456 | 418..480 | 100 | -> | Plus |
3L | 17436324..17436377 | 481..534 | 100 | -> | Plus |
3L | 17436513..17437083 | 535..1102 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:26 Download gff for
FMO12872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17427289..17427433 | 273..417 | 100 | -> | Plus |
arm_3L | 17427494..17427556 | 418..480 | 100 | -> | Plus |
arm_3L | 17429424..17429477 | 481..534 | 100 | -> | Plus |
arm_3L | 17426970..17427237 | 2..272 | 98 | -> | Plus |
arm_3L | 17429613..17430183 | 535..1102 | 97 | | Plus |