FMO12874.5prime Sequence
1119 bp (1035 high quality bases) assembled on 2013-01-29
> FMO12874.5prime
CAGTCGACATGCCCAACACATACAGTGCTTTGCCCCATAATCGGAGCTCA
GGTGAGAGCCAGCAACAGTGGACATCCTCCAGTAGAAATCGCACCTGCCA
TCCAGTGAGCATGGCCAGATCAACGAGTGGCCACTTGATTTTCCTCCTCT
TGATCTGCCTAATAAACTCGGCCGCCAAAGCGGATGGAACGGCTCGGAAT
GGTCGTCTTGGCCGTCATCTCTCTACCACTCCTTTAAGCCATCCGACCGT
GGAATCGCAGCCAACCGAGGAGCAAGAAATGTTTACCGAGTCACCAACGG
AATCCCCAGAGGATGTCGAGCTTGCGACGACGACGGAACTACCGCCGGAA
GAAGACTGGCAGCCTCTGATAAATGCCACCAAGTTTCCCACGAGGAAGCC
GATGGACAAAATGGCTCCCAGTGATTCCCTGCTCCTTAGACTGGCCCGGC
GATTCGCCAGTGGAAACGAGCTGTGGGACGGCCTTGTCCGCGATTGCTAT
CTAAAGCCAGATGTATCTTGCTTCCAAAAGAACGTCTTCAGCTACCTGGA
TAACGTTCTGGATGTGCAGGACGTGAATGTGACCCAAAGGCTCAAGTTCT
TCAAGAATCAAGTGGACTACCAAGTGGACAAGGAGAAGGAGGAGCACTCG
GAGGCACGTGCCGCCAGTGCGGAAACCCCGATCGAGGAAGTGACCAGCGC
TCTATATGGCAAGAGCATCAAGTTTGCCATGACCCACGATCTAGAGGTGG
ACCTGCCTGAGGTTATGTTCAATGGCGCCACCTTTCGCATCTCGCCGCGA
GCCATTGAAGGCAATGGAATCATCGCCAAGCTGGAGCTGATTCCCAAACA
GGTAGTCAAAGCCCGACTGGCCGGGGCGATAATCCAGAAGAAGATACAAA
ATTTCTACGCAGCAAACTGGTGCTGTCATTCCTCGCATTGCTGCTGATCA
TTAAAATCATCAGATCAAGTTGTTCTGGCTCCTGCCATCGTCATCGGGAG
TGGTGCGGCAGAAGCTGCTGCTAAGTTCTGGCTCTTCCTGTCCCAGCGCT
GTCGCAATTCTCAGGCCTGCCGCCTTACAGCAATCTATCACGCACCGCCA
GTAACCCCACTAAGATCAC
FMO12874.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi17-RD | 4068 | CG15598-RD | 1305..2404 | 9..1096 | 5060 | 98.1 | Plus |
| Osi17-RC | 3355 | CG15598-RC | 592..1691 | 9..1096 | 5060 | 98.1 | Plus |
| Osi17-RB | 3762 | CG15598-RB | 1305..2404 | 9..1096 | 5060 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6315887..6316541 | 9..663 | 3275 | 100 | Plus |
| 3R | 32079331 | 3R | 6317773..6318007 | 663..897 | 1175 | 100 | Plus |
| 3R | 32079331 | 3R | 6318165..6318329 | 898..1056 | 485 | 93.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:25:17 has no hits.
FMO12874.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:14 Download gff for
FMO12874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi17-RA | 583..1705 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:11 Download gff for
FMO12874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi17-RB | 1298..2420 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:43 Download gff for
FMO12874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi17-RB | 1298..2420 | 1..1110 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:43 Download gff for
FMO12874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6315880..6316541 | 1..663 | 99 | -> | Plus |
| 3R | 6317774..6318007 | 664..897 | 100 | -> | Plus |
| 3R | 6318164..6318338 | 898..1064 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:11 Download gff for
FMO12874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2141602..2142263 | 1..663 | 99 | -> | Plus |
| arm_3R | 2143496..2143729 | 664..897 | 100 | -> | Plus |
| arm_3R | 2143886..2144060 | 898..1064 | 91 | -> | Plus |
