FMO12877.5prime Sequence
557 bp (557 high quality bases) assembled on 2013-01-29
> FMO12877.5prime
CAGTCGACATGAAGGTCTTTGTCGTTCTCGCCGTAATCCTGGCCGTGTCC
AGTGCCGCCCCGCAGTTTAATAATGGCAATGCTAACGCAAATGCCAACGC
AAATGCTGAGAGTGAGGGCGGTGGAAGACCAGGATTCAGCGGACCTGGTT
TCCAGAAGGAAGGCGGATTCGGAGGAGGATTCGGGGAACGAGGCCCTGGA
TTCGGAGGACAGGGTGGATTCGGAGGGCCAGGACAAGGTGGATTCGGAGG
ACCAGGTGGCTTTGAAGGACAAGGTGGATTCGGCGGACAGGGTGGATTCG
GAGGACAGGGTGGATTCGGAGGACAGGGTGGATTCGGAGGACCAGGAGGA
TTCGGAGGACCAGGAGGACCAGGAGGATTCGGTGGTAACTCCGAAGCTAA
CGCCAATGCCAATGCTGTCGCCAACTCTGACGGAGGATTTGTTTTTGGTA
ATGCCAATGCAAACGCCAATGCCAATGCCAACACCCGAGGTGGCAGTGCT
AATGCTAACGCCAATGCCGTCGCCAACGCATTCCGCAAAGCAAGCTTTCT
AGACCAT
FMO12877.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7299-RC | 983 | CG7299-RC | 37..568 | 8..539 | 2600 | 99.2 | Plus |
| CG7299-RA | 643 | CG7299-RA | 37..568 | 8..539 | 2600 | 99.2 | Plus |
| CG7299-RC | 983 | CG7299-RC | 265..389 | 173..306 | 220 | 79.1 | Plus |
| CG7299-RA | 643 | CG7299-RA | 265..389 | 173..306 | 220 | 79.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10683842..10684373 | 539..8 | 2600 | 99.2 | Minus |
| 2L | 23513712 | 2L | 10684021..10684115 | 324..230 | 310 | 88.4 | Minus |
| 2L | 23513712 | 2L | 10684057..10684151 | 360..266 | 310 | 88.4 | Minus |
| 2L | 23513712 | 2L | 10684021..10684096 | 306..231 | 215 | 85.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:25:36 has no hits.
FMO12877.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:16 Download gff for
FMO12877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7299-RA | 27..571 | 1..545 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:25 Download gff for
FMO12877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7299-RA | 29..573 | 1..545 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:54 Download gff for
FMO12877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7299-RA | 29..573 | 1..545 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:54 Download gff for
FMO12877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10683837..10684381 | 1..545 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:25 Download gff for
FMO12877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10683837..10684381 | 1..545 | 98 | | Minus |
