FMO12878.5prime Sequence
959 bp (913 high quality bases) assembled on 2013-01-29
> FMO12878.5prime
CAGTCCAACATGTCAACCACTGCCGATCCCGTGGCGCTGGGGGTAAACTC
CCCCGTGGAGGATGTAGTGGCCAAAACCACCACAACGGTGGCCAATGCGA
TTGCCAAGACAGTGGCCGTAATTAGCAGCACGGTCTCAACTAGCTCCACA
ACTGGCGCCACTTCCACCATTTCAACGAGTAGTAGCACACCCACTACCTC
GACCACTTTCGCCTACACTCCCACGCCCACTCCCACTCAATCAGCATCCC
CATCCCTGGAGGATGGTGAGGAGAAACTCAGCGTGAAGGATTTAAGCCAG
GCCCTGCAGCATTTCGGTATTGTTGATTACTTGGTCTTCATCGCCATGTT
GGCGGTCTGCGCCGTTATCGGCTTCTATTTCGGCTTTATCGAAAAGAAAC
AAAAGAAACAGAAGCTGGCCGGCAAGGACGGCGGTGGGGCGGCGGGCGTC
GAGGAGAGGCGTGGCTCGGAGGCGCTGGACTACCTGGTGGGCGGACGGCA
AATGAAAGTGTTTTCGGTCGCGCTGTCACTTGTGGCCAGCTTCGTGTCTG
GAATCTCGCTTCTGGGAACATCAACGGAAATCTATGTATATGGCACGCAG
TACGCCTTCATTCTGGTGACCCTGGCCATTTCGGGAGCTATTTCGTGGTA
TATATTCCTGCCTGTATTCTGCAATCTCCAGCTGACATCCACCTATGAGT
ACTTTCAATTGCGCTATGGCGCTGGCATACGCAATTTGGGCTCGGTTCTA
TTTATTGTGGGCACGATGCTCTGGCTTCCTGTTGCGCTTTATGTACCGGC
CATCACCTACAATCAAGTGACTGGCACTGGGCATCCATGTAACTAACGCC
CATTGTGTGCACTATCTGCACTTTCTACACGTGTGTGGGCGGACTTAAAG
GCGTCGTTGGACGATGTCATTCAAACCTTTGTTAGTATCGCTCCATTTTC
GCCGTTGCG
FMO12878.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42235-RC | 2328 | CG42235-RC | 225..1172 | 10..956 | 4430 | 98.1 | Plus |
| CG42235-RD | 2389 | CG42235-RD | 225..919 | 10..704 | 3430 | 99.6 | Plus |
| CG42235-RE | 2500 | CG42235-RE | 225..920 | 10..705 | 3420 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25907663..25908192 | 10..539 | 2605 | 99.4 | Plus |
| 3R | 32079331 | 3R | 25910025..25910186 | 538..699 | 810 | 100 | Plus |
| 3R | 32079331 | 3R | 25914994..25915061 | 698..765 | 340 | 100 | Plus |
| 3R | 32079331 | 3R | 25915118..25915170 | 765..817 | 265 | 100 | Plus |
| 3R | 32079331 | 3R | 25915358..25915428 | 816..888 | 250 | 95.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:25:43 has no hits.
FMO12878.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:17 Download gff for
FMO12878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42235-RC | 215..1139 | 10..934 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:29 Download gff for
FMO12878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42235-RC | 215..1139 | 10..934 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:57 Download gff for
FMO12878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42235-RC | 225..1149 | 10..934 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:57 Download gff for
FMO12878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25907663..25908192 | 10..539 | 99 | -> | Plus |
| 3R | 25910027..25910186 | 540..699 | 100 | -> | Plus |
| 3R | 25914996..25915061 | 700..765 | 100 | -> | Plus |
| 3R | 25915119..25915170 | 766..817 | 100 | -> | Plus |
| 3R | 25915360..25915428 | 818..888 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:29 Download gff for
FMO12878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21733385..21733914 | 10..539 | 99 | -> | Plus |
| arm_3R | 21735749..21735908 | 540..699 | 100 | -> | Plus |
| arm_3R | 21740718..21740783 | 700..765 | 100 | -> | Plus |
| arm_3R | 21740841..21740892 | 766..817 | 100 | -> | Plus |
| arm_3R | 21741082..21741150 | 818..888 | 95 | == | Plus |
