Clone FMO12879 Report

Search the DGRC for FMO12879

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:128
Well:79
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG5292-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12879.5prime Sequence

506 bp (506 high quality bases) assembled on 2013-01-29

> FMO12879.5prime
CAGTCGACATGGCCGCCTTCATGGAGGAAGCGTTAGTGGAGGCGAGGCGG
GCACGTGACGCCGGCGAGGTGCCCGTGGGCTGTGTGTTCGTTCATGGGGA
CAAGGTGGTCGCACGTGGCGGGAACGAGGTGAACGTCCACCGGAACGCCA
CTCGCCACGCGGAATTCATTTGCATCGACGCTATCCTCGCCAGCTGCCGC
GAGAGACGTCTGCCGGCCCGCCAGCTGTTCAGCGAGATCACCGTGGTGGT
CACCGTGGAGCCCTGCATTATGTGCTCCGCCGCCCTGCACACTCTGGGCG
TCAAGGAGATCATCTACGGCTGTGAGAACGATCGTTTCGGAGGAAAGACG
GTCGTGGATGTGGCCGCCGTCGTTGGCCATAGGATCGAGATCACGGGCGG
TGTGCGGGCGGATGAGGCGATGGCTCTGCTAAAGGATTTCTACAAGGGCG
ACAATCCGGCGGCACCGCCACAGGCCAAGAAGAAAAAGGCAAGCTTTCTA
GACCAT

FMO12879.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5292-RB 1855 CG5292-RB 114..593 9..488 2400 100 Plus
CG5292-RA 1191 CG5292-RA 114..593 9..488 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17151974..17152453 9..488 2400 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:25:46 has no hits.

FMO12879.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:18 Download gff for FMO12879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 101..588 1..488 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:31 Download gff for FMO12879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 106..593 1..488 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:59 Download gff for FMO12879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 106..593 1..488 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:59 Download gff for FMO12879.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17151966..17152453 1..488 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:31 Download gff for FMO12879.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12977688..12978175 1..488 99   Plus