Clone FMO12880 Report

Search the DGRC for FMO12880

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:128
Well:80
Vector:pMK33-CFH-BD
Associated Gene/TranscriptGp150-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12880.5prime Sequence

1069 bp (990 high quality bases) assembled on 2013-01-29

> FMO12880.5prime
CAGTCGACATGAGTCGCCAGTCGACTTGCAGGCTAGTCCTGCTGCTGGCC
TTTACCCTGGCCCTAATCCACGCCAGCCACTCAAATACCGTGGGCCCCAA
GATCCACTTCATTCATGACGATCTGACGGAAAACGAGCTGAACTCTGGAG
AGGAGGTGAGCCCGACCGAGAGTCTGCCCAAAATCTCCACCCCCAAGGTA
AAGGATTTACCCGTGGAGACGACCACCAGGAGCCCCACAAAAAAAACCAC
GTCCTCCGGCACCGAGAAGTCCCTTAGCGAGGAGGCTTGGAATGATCTGA
TGGAGGCGGCCAAGCACAGCCAAGCTTTGGCTGATGATCCACACTTCAAC
AAGATGCTCAATACTACCGTCGCCGCCGGGGAGAAGAACTCCACCGATAC
CGACGATAGCGAATACTATGACTACGATGATGATTACAACTATTTCGATG
AGGAGACGGTGACGATTTCCCCCAGTCCCAAGAAGGCCAAGAGCAACCCC
AAGCTGCAGCCCATTGTGGATGCCACCATCACGAAGTCCAAGAGCAAATC
CAACGACCAAAAGACCAAAGAGAGTGCTAACGATATCGACAGCGACTCTC
AATATGACTACGACGAGGGTCTGGATGATGATGATGACGAGGACGATGCC
GCTGACGACCTTTTGACCGATGATGAGCAAGTTGTCTTCAGCGAGGACGT
TCCGTGTCCAAGATTCTGCCAGTGTGCCCGGAATGTCAACAGCTATCTGG
TGGCCACCTGCAGCAGACTTGACATGGGCATCCAGAAGTTTGGCTCTGAC
ATTACGGATTTGGTTGTGACCAATGTGGGTCCTAAGTACCCCATCCTGAT
GGGACCCAACTTCTTCCAGAATCTGGGTCTTAGGACGTGGCTTCCATCAA
GATCGCCACTGCACCTTGGAGTACTGCACGCCGAGGCCTTCCACGGACTG
AACGAGCTGTACGCTGTTAACTTGACGATGTGGTTTGGCTTACAATATTC
CGAATACCTTTGTTGAAACAGAAAACTGGGCCTGCCTGAACATTTTCCGG
TAACGACTCGCGTGTGATA

FMO12880.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
Gp150-RF 4124 CG5820-RF 77..1140 9..1068 4905 97.8 Plus
Gp150-RD 4190 CG5820-RD 143..1206 9..1068 4905 97.8 Plus
Gp150-RC 4360 CG5820-RC 313..1376 9..1068 4905 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22325194..22325727 9..542 2670 100 Plus
2R 25286936 2R 22325781..22326260 541..1015 2045 97.5 Plus
Blast to na_te.dros performed 2014-11-28 18:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 1958..1986 472..444 109 86.2 Minus

FMO12880.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:18 Download gff for FMO12880.5prime
Subject Subject Range Query Range Percent Splice Strand
Gp150-RB 190..1229 1..1035 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:35 Download gff for FMO12880.5prime
Subject Subject Range Query Range Percent Splice Strand
Gp150-RC 306..1345 1..1035 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:02 Download gff for FMO12880.5prime
Subject Subject Range Query Range Percent Splice Strand
Gp150-RC 306..1345 1..1035 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:02 Download gff for FMO12880.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22325187..22325727 1..542 99 -> Plus
2R 22325783..22326227 543..982 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:35 Download gff for FMO12880.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18212692..18213232 1..542 99 -> Plus
arm_2R 18213288..18213732 543..982 98 -> Plus