FMO12880.5prime Sequence
1069 bp (990 high quality bases) assembled on 2013-01-29
> FMO12880.5prime
CAGTCGACATGAGTCGCCAGTCGACTTGCAGGCTAGTCCTGCTGCTGGCC
TTTACCCTGGCCCTAATCCACGCCAGCCACTCAAATACCGTGGGCCCCAA
GATCCACTTCATTCATGACGATCTGACGGAAAACGAGCTGAACTCTGGAG
AGGAGGTGAGCCCGACCGAGAGTCTGCCCAAAATCTCCACCCCCAAGGTA
AAGGATTTACCCGTGGAGACGACCACCAGGAGCCCCACAAAAAAAACCAC
GTCCTCCGGCACCGAGAAGTCCCTTAGCGAGGAGGCTTGGAATGATCTGA
TGGAGGCGGCCAAGCACAGCCAAGCTTTGGCTGATGATCCACACTTCAAC
AAGATGCTCAATACTACCGTCGCCGCCGGGGAGAAGAACTCCACCGATAC
CGACGATAGCGAATACTATGACTACGATGATGATTACAACTATTTCGATG
AGGAGACGGTGACGATTTCCCCCAGTCCCAAGAAGGCCAAGAGCAACCCC
AAGCTGCAGCCCATTGTGGATGCCACCATCACGAAGTCCAAGAGCAAATC
CAACGACCAAAAGACCAAAGAGAGTGCTAACGATATCGACAGCGACTCTC
AATATGACTACGACGAGGGTCTGGATGATGATGATGACGAGGACGATGCC
GCTGACGACCTTTTGACCGATGATGAGCAAGTTGTCTTCAGCGAGGACGT
TCCGTGTCCAAGATTCTGCCAGTGTGCCCGGAATGTCAACAGCTATCTGG
TGGCCACCTGCAGCAGACTTGACATGGGCATCCAGAAGTTTGGCTCTGAC
ATTACGGATTTGGTTGTGACCAATGTGGGTCCTAAGTACCCCATCCTGAT
GGGACCCAACTTCTTCCAGAATCTGGGTCTTAGGACGTGGCTTCCATCAA
GATCGCCACTGCACCTTGGAGTACTGCACGCCGAGGCCTTCCACGGACTG
AACGAGCTGTACGCTGTTAACTTGACGATGTGGTTTGGCTTACAATATTC
CGAATACCTTTGTTGAAACAGAAAACTGGGCCTGCCTGAACATTTTCCGG
TAACGACTCGCGTGTGATA
FMO12880.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gp150-RF | 4124 | CG5820-RF | 77..1140 | 9..1068 | 4905 | 97.8 | Plus |
Gp150-RD | 4190 | CG5820-RD | 143..1206 | 9..1068 | 4905 | 97.8 | Plus |
Gp150-RC | 4360 | CG5820-RC | 313..1376 | 9..1068 | 4905 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22325194..22325727 | 9..542 | 2670 | 100 | Plus |
2R | 25286936 | 2R | 22325781..22326260 | 541..1015 | 2045 | 97.5 | Plus |
Blast to na_te.dros performed 2014-11-28 18:25:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 1958..1986 | 472..444 | 109 | 86.2 | Minus |
FMO12880.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:18 Download gff for
FMO12880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gp150-RB | 190..1229 | 1..1035 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:35 Download gff for
FMO12880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gp150-RC | 306..1345 | 1..1035 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:02 Download gff for
FMO12880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gp150-RC | 306..1345 | 1..1035 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:02 Download gff for
FMO12880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22325187..22325727 | 1..542 | 99 | -> | Plus |
2R | 22325783..22326227 | 543..982 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:35 Download gff for
FMO12880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18212692..18213232 | 1..542 | 99 | -> | Plus |
arm_2R | 18213288..18213732 | 543..982 | 98 | -> | Plus |