FMO12881.5prime Sequence
883 bp (795 high quality bases) assembled on 2013-01-29
> FMO12881.5prime
CAATCCACATGTACAAAAATCTGGAGGAGCACAACCGGCTGGTTAACAAA
TACCTAAAGATATTCTTCGTCGTGTCGCTCTACTGGTGCACCTCGATATT
GACGGTATTCGTAAATAAGCACCTGCTGAACAGCGATACAGTAAACCTGG
GAGCTCCGCTCTTTATGTCCTGGTTCCAATGCGTGGTTTCCACAGTGATA
TGTTTTGTGGCAAGTCGGCTGAGCAGGAAGTACCCCTCGGTATTTACGTT
TCCCGAGGGAAATCCACTGGACATCGACACCTTCCGCAAGATCCTGCCTC
TATCTGTGCTCTATACCCTGATGATTGGGGCCAACAACCTGTCGCTGTCC
TACGTCACAGTGGCCTTCTACTACATCGGTCGCTCCCTAACAACCGTGTT
TAGTGTGGTCCTCACTTACGTGATTCTACGCCAACGAACCAGCTTCAAGT
GCCTGCTGTGTTGTGGCGCTATTGTCGTTGGATTCTGGCTGGGTGTGGAC
CAAGAAAGCCTGACGGAGGTCTTCTCCTGGCGGGGAACCATCTTTGGAGT
GCTTAGTTCGCTTGCTTTGGCCATGTTTTCTATTCAGACGAAGAAATCAT
TGGGTTATGTCAACCAGGAGGTATGGCTGCTTAGCTACTACAATAATCTC
TACTCCACGTTGCTCTTCCTGCCCCTGATCATCATCAATGGCGAGCTGGA
GAGCATTATCACGTATCCGCACCTGTGGGCTTCTTGGTTCTGGGCCGCGA
TGACGCTTAGTGGTCTTTGTGGCTTTGCCATTGGATTTGTCACTGCGCTG
GAAATCAAGGTCACATCCGCCCTGACGCATAATATCTCGGGAACCGGCCA
AGGCCTGCCTCAACGGCGATCGCCATTCAATAC
FMO12881.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:26:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nac-RA | 1225 | CG9620-RA | 99..974 | 9..883 | 4220 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8303063..8303789 | 811..85 | 3605 | 99.7 | Minus |
| 3R | 32079331 | 3R | 8303846..8303925 | 88..9 | 385 | 98.8 | Minus |
| 3R | 32079331 | 3R | 8302964..8303013 | 858..808 | 205 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:26:00 has no hits.
FMO12881.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:19 Download gff for
FMO12881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfr-RA | 77..962 | 1..883 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:40 Download gff for
FMO12881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nac-RA | 89..974 | 1..883 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:07 Download gff for
FMO12881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nac-RA | 89..974 | 1..883 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:07 Download gff for
FMO12881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8302937..8303011 | 810..883 | 92 | <- | Minus |
| 3R | 8303065..8303788 | 86..809 | 99 | <- | Minus |
| 3R | 8303849..8303932 | 1..85 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:40 Download gff for
FMO12881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4128659..4128733 | 810..883 | 92 | <- | Minus |
| arm_3R | 4128787..4129510 | 86..809 | 99 | <- | Minus |
| arm_3R | 4129571..4129654 | 1..85 | 94 | | Minus |
