FMO12882.5prime Sequence
707 bp (707 high quality bases) assembled on 2013-01-29
> FMO12882.5prime
CAGTCGACATGACTCACCTGTCAGCGTTGGCATTGCTGATGCTGCACTTG
CTCCTGGTGGTGCCCATACCGGCGTCCAATCCGCCCGTCACTCAACCCCA
ACCCGTTGACAATTTCGAGGGGCTCAGTCCACTGTCCAAACATTTCGATA
GCCACATGGTCAGTCCATCGACCAGCAATATTCCCAGCTCCGACTTTGAT
TCCGCATCCGGCAATTCCACAAGGATTCTGCGTCGCGGCAAGCGTTATCT
TCAATTCAGCAAGGGATCACGTATGTCGTGGCGTACCAACGGCAAGAACA
ATCTGTGGACAATCAACACTCTGTATGCCTACGGCTATGGCTTCCGTGCC
AATTATCCCTTTCCATCCATCGAGGAGCAGAAGAAGGATAATGCCGTCTT
TTTTCGCCTGTTCAAGAGGGACCTCTTCTCAAAACTGGAGACTGCTCTGG
ATGGACATGGCTTCGATGGTCGAGCTTGCATGCTGAAGTCGTTCTGCACT
GCCATTAACGATGTGGATAATCCCAAGCAAAAGAGCGGAATGCTTTTCAA
AATGCTTAAATTGATATTCCGACTGGATGAGCACGACAAGCGGCATATGC
CGCATCTGCGGGAGGAGAACTGCGAGCAAATCATGCACAGCCATTGTCCA
TTGAGTTTCGACAGCATATCCCCATACACCGATGATGTTGCAAGCTTTCT
AGACCAT
FMO12882.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:24:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17780-RA | 1279 | CG17780-RA | 167..849 | 7..689 | 3415 | 100 | Plus |
| CG17780-RB | 1633 | CG17780-RB | 167..731 | 7..571 | 2825 | 100 | Plus |
| CG17780-RB | 1633 | CG17780-RB | 1086..1203 | 572..689 | 590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24384608..24384886 | 285..7 | 1365 | 99.3 | Minus |
| 3R | 32079331 | 3R | 24384362..24384538 | 454..278 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 24383350..24383468 | 689..571 | 595 | 100 | Minus |
| 3R | 32079331 | 3R | 24384147..24384264 | 571..454 | 590 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:24:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2388 | 63..26 | 118 | 78.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6856..6893 | 63..26 | 118 | 78.9 | Minus |
FMO12882.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:12 Download gff for
FMO12882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17780-RA | 158..849 | 1..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:58 Download gff for
FMO12882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17780-RA | 162..853 | 1..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:32 Download gff for
FMO12882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17780-RA | 162..853 | 1..695 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:32 Download gff for
FMO12882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24384362..24384537 | 279..454 | 100 | <- | Minus |
| 3R | 24384615..24384891 | 1..278 | 99 | | Minus |
| 3R | 24383346..24383467 | 572..695 | 97 | <- | Minus |
| 3R | 24384147..24384263 | 455..571 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:58 Download gff for
FMO12882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20209068..20209189 | 572..695 | 97 | <- | Minus |
| arm_3R | 20209869..20209985 | 455..571 | 100 | <- | Minus |
| arm_3R | 20210084..20210259 | 279..454 | 100 | <- | Minus |
| arm_3R | 20210337..20210613 | 1..278 | 99 | | Minus |
