FMO12883.5prime Sequence
1098 bp (1000 high quality bases) assembled on 2013-01-29
> FMO12883.5prime
CAGTCGACATGGAATTAGAGAAAGTAAAGATAAACAGCCTTCATTGTAAT
GATGCTGTGCTCTCTTCACTTCAAGCATCCCCTTCTGGGACATCCCCTCA
GAGCGTTCCTTCAAAGGCGAATGTCGTCACCGAGGCTTCTATTATCGAAA
AGACGAATCAACCACATAATGTTCAGGAAGATAATAACTACAATAGAGAT
TGCGACAGCCCCGAAAGTTCTAGCTGGGAGCAGGATAAGGAGTTGGATGA
TCTGCGGAACTTGCACTCCTCCTCTCTAACAAACAGCGTAGTGGTGGGGA
AATCGACTGGCTCGCTAAACGGCGTCTACTCTATCACATCAGTCACTTCC
GAAACTAAAACGCTTGAAAGTGTTGTCACGACCAACTCTGCTAGTGGGTC
GGCATGCTTAAGCAATACACCCACCGCTGATCACATAAAGAAACGTATCC
CAAGCAGTCGAACGCCGACAAGAAAGGCACTGAGAATCAAATTCTACCGG
AACGGGGATCGTTTTTATCCGGGTATAACAATTCCCGTGTCTAACGAACG
GTACAGATCCTTTGAAAGACTTTTTGAAGACCTAACCCGTCTGTTGGAAG
AGAATGTAAAGATACCAGGTGCTGTTCGCACCATCTACAACTTGTGTGGG
AAGAAGATTACCTCTCTCGATGAATTGGAAGATGGACAGAGCTATGTTTG
TTCCTGCAATAACGAGAATTTTAAGAAGGTTGAGTACAACACTGGTTCCC
AGCCTTTGTCCAATCTGCCGCTGAGCAATAGTCGTTCCAACAGTCATCGA
TTGGCTAAGTGTCGACCATCGTCTCCCCTAAAAATGGCTTGCTTGCAAGG
CAGCAGTCCTTTCCCAGCTTGTGGCGGAGGAACGGGAAACGGAAGTCCAC
TTATCGCTTCCAGATTAGCGATCGAGTACAGTGGTTCATCCTCGTATTGG
GACGCTGAATCGTATGGAACTTAGTCGCGGCGATTATGCGATTATTGCTA
ACAAGCGTACAGCCCGACTTCGATCATGTGCTGACGTCATAACCAAATGG
TCTGCTGTAACCGGGCTAATGAGAAAAGAATCCCCTCTTCCGGATCCA
FMO12883.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17528-RD | 4686 | CG17528-RD | 416..1508 | 8..1089 | 4845 | 97 | Plus |
| CG17528-RC | 2645 | CG17528-RC | 210..1302 | 8..1089 | 4845 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4819288..4819936 | 656..8 | 3200 | 99.5 | Minus |
| 2R | 25286936 | 2R | 4818844..4819231 | 1035..655 | 1420 | 96.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:25:04 has no hits.
FMO12883.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:13 Download gff for
FMO12883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17528-RC | 204..1259 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:03 Download gff for
FMO12883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17528-RC | 207..1262 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:36 Download gff for
FMO12883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17528-RC | 207..1262 | 1..1051 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:36 Download gff for
FMO12883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4818831..4819229 | 657..1046 | 95 | <- | Minus |
| 2R | 4819288..4819939 | 1..656 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:03 Download gff for
FMO12883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 706336..706734 | 657..1046 | 95 | <- | Minus |
| arm_2R | 706793..707444 | 1..656 | 98 | | Minus |
