FMO12885.5prime Sequence
1117 bp (1021 high quality bases) assembled on 2013-01-29
> FMO12885.5prime
CAGTCGACATGAGCGAGAACGAGAAGCGTCCCGATCTGGAGGATCAGGAT
CAGGATCAGAATCAGGAGCAGGCTGGCGGCAGGAAAATGGAGATCCTGCT
GGAACTAAACCTAAAGCAGAAGCTGGCCACCCGACTAGGCACCATCCTGC
TGGCCACAGTGATCTTCGGCGCCTTTTGCTGGGACAACGCGTTGGCCAGT
CTAACACTGGGAGCAGTGGTGGCTCTCCTGCTCAGAAATCCCACCTTCGT
CTTTGCCTTGGTAATGACCGCGTCCAGGGACCTAAAGGCTTTCCAGCGAT
TCGTGGCCCTCAACATCTACCTGCTAAGAAAGGATCGCGGCGGATTCACT
GTGGCCCGCTGTTTCCAGGACCAGGCCAGACGCCGCCCCAAAAAGACATG
CTTCGTGATGGACGATCGCCATTTAAGCTTTGCAGAGGCTCTGGAGTTTA
GCCAAAAGATAGCTGGATATTTTAGCGATCGCGGCCTGGAGAGGGGCGAC
TGTGTGGCCCTACTAATGGAAACGCGTCTGGAGTATCCCTGCATTTGGTT
GGGTCTCTCCCAGCTCGGGGTAATCACAGCCCTTATTAACTCCAATCTGC
GCGGGGAGTCTCTGCTGCACTCCATCAAAGTGGCCAATGCCAAGGCCCTA
ATTGTGGGCAGTGAACTCCTGGATGTGCTGGTATCACTTAGGGAGAAGGA
GCAGTTGGACGAGGTGCCCATCTATCAGTACACAGATGACGAGGTTCGCG
GGGTGGCTGGACATGATCTTTTGCCAGGAGCTGTGGACTTGGTTACTGCT
CTAAAGACCCAAAAGAAACTGGAGCTACCGAGTGCTGTCTGTCCTGAGAA
GCTCGTTCCAAATTGCTCTACGTTTACACCTCTGGAACTACGGGCTTGCC
AAAGCAGCTGTGATCACAACCTGCGGTTCTCTTCATGTCTGCAGATCCTA
CTACATGCTCAGATGTCCAGCGACGATGTGGTGTACGATCCCTTCCCTCT
ACACACGCTGGTGAATTGTGGGGAGTGGGCAATGCATCCTCATTGAATCC
GCGTGGGCTGCCAAAAGTCTCGTAGACTCTCGACTCGGATCGCGATCGCC
AAACTGCCACGGGGGCC
FMO12885.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:26:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3394-RA | 2308 | CG3394-RA | 125..1196 | 9..1066 | 4920 | 98.2 | Plus |
| CG3394-RB | 2357 | CG3394-RB | 175..1245 | 10..1066 | 4915 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:26:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24295908..24296619 | 287..992 | 3260 | 99.2 | Plus |
| 2R | 25286936 | 2R | 24295573..24295850 | 10..287 | 1390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:26:20 has no hits.
FMO12885.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:21 Download gff for
FMO12885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3394-RA | 124..1183 | 9..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:54 Download gff for
FMO12885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3394-RA | 125..1184 | 9..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:19 Download gff for
FMO12885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3394-RA | 125..1184 | 9..1056 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:19 Download gff for
FMO12885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24295569..24295849 | 6..286 | 99 | -> | Plus |
| 2R | 24295908..24296689 | 287..1056 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:54 Download gff for
FMO12885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20183092..20183372 | 6..286 | 99 | -> | Plus |
| arm_2R | 20183431..20184212 | 287..1056 | 97 | | Plus |
