FMO12887.5prime Sequence
1113 bp (1013 high quality bases) assembled on 2013-01-29
> FMO12887.5prime
CAGTCGACATGGAAATGGCTATCTGCGGCGGTGGCATCCCCACCTTAATG
CTACTGATAATGACTGCGATCATAAGTTTGGTCCAAGCTGCAGATACCTG
GCAGCGTTTACCATCCCTAGAAACGTTTTCCTCATATGAGGACATGCAGC
GTTACTTTGATCAACGGAATTTCCGCAGCATGCGTCAAATTGACAATCCC
ACGGGTGACACCTACTTGGCAGCCTTCAATCAGTACAATGAGCAAGTGGA
GAATCAGTCTCCAAGACGTGTGGCCCAAACCCACTCTAGGATCAAGCGTG
AGCAACGCCAACTGCCAACGGCACCAAGAATGCTGCGTTTCGAGCTGGCG
GATGCCGTCGAGCCAAGTCCGGAACTTAAGCAAATTCTACGTCAATATCA
CGCCAGAGCCCTCAAGGAAAATCCCACTGCTGCAAGTCCAGCCAGTACCA
GTCAGGCACCGACTCCTGCAGTTAGTCCCACCAAGGCCACAAAAGCCAAG
TCCCGGAAACCACGTCGACAGAGACGATCAGTTGTGGGTGCCCAGCAGCC
GGCGGATTTTAAAGTTCAAATGATCCCTTTCGAAGAAACAGATGCTAGGG
AGCCCGATCCCATCACAGCTCAGCTGATCAAGAAGGCACGCTCCCTGGAT
CTCCAGAGTCAGGCCACTAGATCCACAGACTTTCGCCACACTAAGCCCCA
AGTGGCCAGGAAGCAGCCTATTCAGGTGAGGATTCGCAAAACAAAGCGCT
CCAAGCGTTCGGCTCCGCAGATGATCAAATTTGAGTTGGCCGATGCCAAA
GCCATGCCCCAAAGATCTGGCAAACAATGGTATCTGAAGCTGTACCCACT
CTACTGACTATGGAAACCCAGAGGAATACACCCAAGCTCCGCAGCTGACT
ACACCACTCTCGGGTGAGACATGATATCCTCACTGGTGAGCTACGGCGGA
AACAACGCATGTATGTTACAAGAGGCTCCTGTCATTCTGGACATGTGAAG
ACAAGAATTCCTGAGCACTTGCCCCATGATGCAAAAGTCATAGCAGCTGA
TGAGAATGGATGGTGCAGGCTAGTTCAGTATCTTCCTGCAGATTCGGTCG
ACACTACAGCCAT
FMO12887.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:26:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr50Ca-RA | 3427 | CG13338-RA | 269..1343 | 9..1061 | 4815 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:26:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13774338..13775216 | 139..1004 | 3805 | 98.2 | Plus |
2R | 25286936 | 2R | 13774187..13774278 | 50..141 | 460 | 100 | Plus |
2R | 25286936 | 2R | 13770975..13771016 | 9..50 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:26:31 has no hits.
FMO12887.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:22 Download gff for
FMO12887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr50Ca-RA | 263..1277 | 2..1004 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:01 Download gff for
FMO12887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr50Ca-RA | 263..1277 | 2..1004 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:23 Download gff for
FMO12887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr50Ca-RA | 263..1277 | 2..1004 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:23 Download gff for
FMO12887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13770969..13771016 | 2..50 | 91 | -> | Plus |
2R | 13774188..13774277 | 51..140 | 100 | -> | Plus |
2R | 13774340..13775216 | 141..1004 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:01 Download gff for
FMO12887.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9658474..9658521 | 2..50 | 91 | -> | Plus |
arm_2R | 9661693..9661782 | 51..140 | 100 | -> | Plus |
arm_2R | 9661845..9662721 | 141..1004 | 98 | == | Plus |