Clone FMO12887 Report

Search the DGRC for FMO12887

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:128
Well:87
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCpr50Ca-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12887.5prime Sequence

1113 bp (1013 high quality bases) assembled on 2013-01-29

> FMO12887.5prime
CAGTCGACATGGAAATGGCTATCTGCGGCGGTGGCATCCCCACCTTAATG
CTACTGATAATGACTGCGATCATAAGTTTGGTCCAAGCTGCAGATACCTG
GCAGCGTTTACCATCCCTAGAAACGTTTTCCTCATATGAGGACATGCAGC
GTTACTTTGATCAACGGAATTTCCGCAGCATGCGTCAAATTGACAATCCC
ACGGGTGACACCTACTTGGCAGCCTTCAATCAGTACAATGAGCAAGTGGA
GAATCAGTCTCCAAGACGTGTGGCCCAAACCCACTCTAGGATCAAGCGTG
AGCAACGCCAACTGCCAACGGCACCAAGAATGCTGCGTTTCGAGCTGGCG
GATGCCGTCGAGCCAAGTCCGGAACTTAAGCAAATTCTACGTCAATATCA
CGCCAGAGCCCTCAAGGAAAATCCCACTGCTGCAAGTCCAGCCAGTACCA
GTCAGGCACCGACTCCTGCAGTTAGTCCCACCAAGGCCACAAAAGCCAAG
TCCCGGAAACCACGTCGACAGAGACGATCAGTTGTGGGTGCCCAGCAGCC
GGCGGATTTTAAAGTTCAAATGATCCCTTTCGAAGAAACAGATGCTAGGG
AGCCCGATCCCATCACAGCTCAGCTGATCAAGAAGGCACGCTCCCTGGAT
CTCCAGAGTCAGGCCACTAGATCCACAGACTTTCGCCACACTAAGCCCCA
AGTGGCCAGGAAGCAGCCTATTCAGGTGAGGATTCGCAAAACAAAGCGCT
CCAAGCGTTCGGCTCCGCAGATGATCAAATTTGAGTTGGCCGATGCCAAA
GCCATGCCCCAAAGATCTGGCAAACAATGGTATCTGAAGCTGTACCCACT
CTACTGACTATGGAAACCCAGAGGAATACACCCAAGCTCCGCAGCTGACT
ACACCACTCTCGGGTGAGACATGATATCCTCACTGGTGAGCTACGGCGGA
AACAACGCATGTATGTTACAAGAGGCTCCTGTCATTCTGGACATGTGAAG
ACAAGAATTCCTGAGCACTTGCCCCATGATGCAAAAGTCATAGCAGCTGA
TGAGAATGGATGGTGCAGGCTAGTTCAGTATCTTCCTGCAGATTCGGTCG
ACACTACAGCCAT

FMO12887.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr50Ca-RA 3427 CG13338-RA 269..1343 9..1061 4815 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13774338..13775216 139..1004 3805 98.2 Plus
2R 25286936 2R 13774187..13774278 50..141 460 100 Plus
2R 25286936 2R 13770975..13771016 9..50 210 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:26:31 has no hits.

FMO12887.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:22 Download gff for FMO12887.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr50Ca-RA 263..1277 2..1004 98 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:01 Download gff for FMO12887.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr50Ca-RA 263..1277 2..1004 98 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:23 Download gff for FMO12887.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr50Ca-RA 263..1277 2..1004 98 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:23 Download gff for FMO12887.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13770969..13771016 2..50 91 -> Plus
2R 13774188..13774277 51..140 100 -> Plus
2R 13774340..13775216 141..1004 98 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:01 Download gff for FMO12887.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9658474..9658521 2..50 91 -> Plus
arm_2R 9661693..9661782 51..140 100 -> Plus
arm_2R 9661845..9662721 141..1004 98 == Plus