FMO12888.5prime Sequence
1055 bp (1021 high quality bases) assembled on 2013-01-29
> FMO12888.5prime
CAGTCGACATGGAGGAATTGCCGCGCGCATTAAACTACGAACTCTCGCAC
GATTTGCATTTCGATCATTACGCCGGTGCCGCAGCTCAGAAGATTCTGAA
CAGCGGGAGAAGTTCTCCTGAAGCGTCCACCCCGACCATCACCACATTGG
ATGCCATCTCCAGCAGTGATTTCCTGAAACAGATTGGCCAGCAGATCCTC
AGTTCCATCCAACTGAAACATCAGCATCAGCTCAACGAAGTCAGCCATCC
GAGGAATTCCACCAGCGAGGAGATCATGGATTTCGATCTGGCCAATCGGG
TGATTCTGGACAGCAGCAGTGTGGATCAGCTGCAGCAGCAGTTGGAGTAC
GATAAATTCATGAACGAGGTGTGGATCGGCATCGTCTTCACCCTGATCCT
CATCTCGATGGTCTTCTGCATCTGCTCCTGCTTCCTGTACCATCAGTTCC
GCACCTGGAAACGCAATTATCGCAACAATGCAAATGGCTCGACGCAGTGC
ACCATTGTAGATATAGAGGCGTTGAAACTGCATCCGGATGTGGAGGATCC
GGTTCCGGAATACACCCTAGTATCTGGATTGCCCAGCTACGAGGCGGCTC
TGGAGCTGCTACAAAAATCCCCGCAGTCATCCTGCCTGATTGTCTATCCG
AGTGTGTTCAATGTGTTCAATAAGCAGGAGAGGAGCAGCCAGGAGCTGCA
GCATCCAGGAGTTGCAACATCAGCACCTCCAGCCGCACCCGAGAATCACC
TGGCACCGCAGACACCTTCGTTTTGTGATGCCACAATGCCGCTGCTCCCA
GCAACAACAGCAGCAGCAGCAACACATGCAGCAGCAACAGTAACAGCAGT
AACAGCAGCAACAGCAACATCTGCAACATTGGCAGCTTCGCCCACGTGCG
AGTCGATTAAGCCAAACTTTGTGATGATGCCAATTGTGCCCAGTTATGCG
GAGTATTCCGGCAGCTCGTAACAAAACCGTCGACGAAAAAAAGAAATCGA
AGTCAAAAGACAGCCAGTCGAAGAAGATATTCAGCGGCAAGCCTTTCAAG
ACCAT
FMO12888.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:26:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| comm2-RA | 1516 | CG7554-RA | 189..1218 | 8..1037 | 4985 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:26:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15697908..15698460 | 1022..469 | 2645 | 98.9 | Minus |
| 3L | 28110227 | 3L | 15699202..15699662 | 468..8 | 2290 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:26:39 has no hits.
FMO12888.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-29 10:44:23 Download gff for
FMO12888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| comm2-RA | 180..1220 | 1..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:04 Download gff for
FMO12888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| comm2-RA | 181..1221 | 1..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:26 Download gff for
FMO12888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| comm2-RA | 181..1221 | 1..1040 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:26 Download gff for
FMO12888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15697889..15698460 | 469..1040 | 98 | <- | Minus |
| 3L | 15699202..15699669 | 1..468 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:04 Download gff for
FMO12888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15690989..15691560 | 469..1040 | 98 | <- | Minus |
| arm_3L | 15692302..15692769 | 1..468 | 98 | | Minus |
